Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 7.8e-180 633.6 314 100.0
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 9.0e-176 620.2 314 97.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.0e-134 483.8 323 75.5
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 6.5e-134 481.1 328 73.5
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 8.8e-131 470.7 319 75.2
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 7.4e-130 467.6 310 75.8
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 3.7e-129 465.3 316 72.8
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 2.4e-128 462.6 312 74.0
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 7.0e-128 461.1 311 74.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 9.1e-128 460.7 319 73.4
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 9.1e-128 460.7 309 73.1
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 9.1e-128 460.7 311 74.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.2e-127 460.3 317 72.6
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.5e-127 459.9 305 76.4
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.5e-127 459.9 318 73.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.0e-127 459.5 308 74.7
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 7.7e-127 457.6 319 74.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 7.7e-127 457.6 321 71.3
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.7e-126 456.4 316 73.1
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.2e-126 456.1 318 72.3
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 3.8e-126 455.3 317 74.1
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.8e-126 455.3 317 71.9
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 6.5e-126 454.5 301 76.4
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 2.5e-125 452.6 321 71.0
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.5e-125 452.6 326 71.8
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 4.2e-125 451.8 312 73.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.2e-124 450.3 309 71.5
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-124 450.3 311 71.4
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.7e-124 449.1 320 70.6
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.7e-124 449.1 319 71.2
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 3.6e-124 448.7 309 71.2
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 6.1e-124 448.0 312 72.4
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 6.1e-124 448.0 312 72.8
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.0e-123 447.2 312 71.8
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.3e-123 446.0 302 74.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.0e-123 445.7 310 71.6
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 3.0e-123 445.7 318 71.1
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.0e-123 445.3 319 70.5
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.0e-123 445.3 319 70.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 6.7e-123 444.5 318 70.8
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 8.8e-123 444.1 317 71.0
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.5e-122 443.4 315 73.3
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.5e-122 443.4 312 70.8
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-122 443.0 312 72.4
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.3e-122 442.2 322 69.6
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.3e-122 442.2 322 69.6
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 7.5e-122 441.0 322 69.3
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 9.7e-122 440.7 309 70.2
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 9.7e-122 440.7 312 70.8
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 3.7e-121 438.7 314 70.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.8e-121 438.3 315 70.5
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 4.8e-121 438.3 312 71.2
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 8.2e-121 437.6 315 70.2
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.8e-120 436.4 307 71.0
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 3.1e-120 435.6 322 69.3
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 5.3e-120 434.9 312 68.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 7.0e-120 434.5 313 71.6
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 7.0e-120 434.5 307 71.7
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 9.1e-120 434.1 315 69.2
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.0e-119 433.0 315 69.8
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 2.0e-119 433.0 305 69.5
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.0e-119 433.0 312 70.5
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 3.5e-119 432.2 313 69.3
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.0e-118 430.6 314 68.8
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 5.0e-118 428.3 312 67.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 8.5e-118 427.6 314 70.4
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 3.2e-117 425.6 340 65.3
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.2e-117 425.6 324 68.5
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 3.2e-117 425.6 312 67.9
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 7.2e-117 424.5 312 68.9
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 7.2e-117 424.5 319 69.9
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 9.4e-117 424.1 315 68.3
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.2e-116 423.7 312 67.9
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.7e-116 422.5 306 69.9
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 8.0e-116 421.0 306 68.3
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.0e-115 420.6 315 67.6
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.0e-115 419.1 306 69.0
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 6.8e-115 417.9 308 67.5
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.5e-114 416.8 308 67.9
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 2.0e-114 416.4 314 67.5
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.3e-113 413.7 309 67.3
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.2e-113 412.9 337 62.6
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.8e-113 412.5 319 65.8
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 6.3e-113 411.4 320 65.3
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 8.3e-113 411.0 315 65.7
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 7.0e-112 407.9 330 60.6
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 7.0e-112 407.9 319 66.1
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 7.7e-111 404.4 310 65.5
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.9e-109 399.8 312 65.7
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 6.1e-108 394.8 284 69.7
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 8.0e-108 394.4 315 63.5
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 7.5e-106 387.9 310 62.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 4.9e-105 385.2 378 55.3
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.4e-104 382.9 308 60.4
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.6e-100 369.0 314 59.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.9e-99 364.4 280 66.1
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.6e-98 362.8 278 66.5
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 6.4e-97 358.2 308 57.8
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.6e-95 353.6 306 63.1
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.3e-94 350.5 306 56.9
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.7e-94 350.1 304 55.6
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.3e-94 349.7 306 55.2
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.6e-92 343.6 235 73.2
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.6e-92 342.4 237 73.4
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.2e-88 327.8 278 62.2
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.9e-85 320.1 231 69.7
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.2e-82 310.8 354 47.5
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.6e-78 295.0 236 60.6
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 5.8e-74 282.0 340 47.1
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 6.4e-73 278.5 198 68.7
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.1e-69 267.7 181 71.8
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 8.1e-68 261.5 207 65.2
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 8.4e-65 251.5 187 67.4
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 7.9e-55 218.4 220 51.4
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.4e-48 197.6 233 50.2
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.2e-48 196.4 163 65.6
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 4.6e-47 192.6 155 62.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.5e-45 187.6 306 37.3
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.5e-42 177.6 195 53.3
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 3.5e-39 166.4 101 79.2
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 3.3e-37 159.8 305 37.4
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.8e-36 156.0 294 36.7
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 9.3e-32 141.7 123 59.3
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 6.3e-28 129.0 121 61.2
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.4e-22 111.3 81 66.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 3.9e-22 109.8 121 55.4
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.6e-21 107.1 75 72.0
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 9.7e-21 105.1 164 43.9
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 5.3e-19 99.4 67 64.2
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 9.1e-19 98.6 148 37.8
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 1.0e-17 95.1 108 49.1
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.2e-17 94.0 118 49.2
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.1e-16 91.7 131 45.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.2e-16 90.1 70 64.3
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 7.2e-16 89.0 81 60.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.2e-15 88.2 62 72.6
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-15 87.8 88 53.4
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 6.7e-14 82.4 60 66.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-12 78.2 83 51.8
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 3.6e-07 60.1 83 44.6


User provided reference genes

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