Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.2e-135 485.7 260 100.0
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.2e-135 485.7 260 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 4.7e-122 441.4 262 89.3
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 89.7
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.9
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 89.3
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.8e-121 437.6 262 88.2
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.8e-121 437.6 262 88.2
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.8e-121 437.6 262 88.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 88.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 88.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.0
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.5e-120 434.1 262 88.2
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 7.5e-120 434.1 262 88.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.3e-119 433.3 262 87.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 87.8
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 87.8
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 88.5
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.7e-119 431.8 262 87.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 3.7e-119 431.8 262 87.4
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.4
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 8.3e-119 430.6 262 87.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 87.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 87.4
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 2.4e-118 429.1 261 86.2
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.9
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 87.0
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 7.1e-118 427.6 260 85.4
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 86.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 9.2e-118 427.2 262 86.3
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 86.3
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.6e-117 424.9 261 84.7
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 4.6e-117 424.9 262 84.7
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 86.3
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 86.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.9
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.3e-116 423.3 258 86.4
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 85.5
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-116 422.9 262 85.1
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.7e-116 422.9 262 83.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 85.9
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 83.2
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 6.6e-116 421.0 262 82.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 85.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 82.8
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 85.1
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.3e-115 418.7 261 83.5
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.7
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 4.3e-115 418.3 261 85.1
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 82.8
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.3e-115 418.3 261 85.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.3e-115 417.5 262 83.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 7.3e-115 417.5 262 83.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-114 416.8 262 82.4
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 84.4
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 83.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 82.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.6e-114 415.2 262 84.4
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.6e-114 415.2 245 88.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 4.7e-114 414.8 263 84.4
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 4.7e-114 414.8 245 88.2
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 85.1
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.4e-113 413.3 263 84.0
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 81.7
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 82.8
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 81.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 80.9
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.2e-113 411.4 252 84.5
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 8.9e-113 410.6 262 80.5
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-112 410.2 263 83.3
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 81.7
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.5e-112 409.8 261 83.5
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.0e-112 409.5 261 81.6
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.6e-112 409.1 261 82.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.4e-112 408.7 263 82.9
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 7.6e-112 407.5 262 80.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 81.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 81.7
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 80.5
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 80.5
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.2e-111 406.0 261 83.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.2e-111 406.0 262 80.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 81.3
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 80.9
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.1e-110 403.7 261 81.6
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-110 401.4 263 81.7
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 9.2e-110 400.6 264 80.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.6e-109 399.8 264 80.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 78.2
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 4.6e-109 398.3 261 80.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.7e-108 396.4 263 81.0
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.7e-108 396.4 264 79.5
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.9e-108 395.2 239 87.4
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 80.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 80.2
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 80.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 80.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 80.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 80.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 79.8
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.3e-107 391.0 262 79.4
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 7.3e-107 391.0 262 79.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 7.3e-107 391.0 262 79.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 7.3e-107 391.0 261 79.7
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.8
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.8
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-106 390.2 263 79.5
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-106 390.2 263 79.5
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.2e-106 390.2 263 79.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 79.4
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 79.4
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 79.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.6e-106 388.7 262 79.4
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 3.6e-106 388.7 262 79.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 8.1e-106 387.5 253 81.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 80.5
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 80.2
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 79.0
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.6e-104 382.5 263 80.2
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 2.9e-103 379.0 261 78.5
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.2e-102 375.6 248 81.9
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.6e-101 373.2 261 77.0
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.3e-100 370.2 270 74.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.0e-100 369.0 270 73.7
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.1e-98 362.8 262 76.3
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.8e-97 359.8 262 75.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 5.3e-97 358.2 261 75.5
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 6.9e-97 357.8 264 75.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.9e-95 352.4 249 73.9
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 8.4e-95 350.9 218 85.3
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 8.4e-95 350.9 241 79.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.6e-93 346.7 210 86.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.8e-92 343.2 226 78.8
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.3e-92 342.8 261 69.3
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.3e-92 342.8 214 86.0
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-91 340.1 262 72.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.3e-91 339.0 234 75.2
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.4e-89 333.6 218 78.9
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.3e-89 331.6 261 66.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 6.0e-85 318.2 219 75.3
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.4e-81 306.2 253 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.5e-78 296.2 218 69.3
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.6e-77 292.0 247 68.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 6.0e-77 291.6 267 60.3
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 8.7e-76 287.7 204 77.5
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.1e-75 287.3 228 62.7
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 7.4e-75 284.6 208 71.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.2e-72 277.3 250 61.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-71 274.2 263 61.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.6e-69 265.4 262 62.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.3e-68 263.1 268 56.7
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.8e-65 253.4 209 64.6
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-63 246.9 240 62.5
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 3.8e-55 219.2 242 51.7
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.4e-52 210.7 130 80.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.8e-52 210.3 244 50.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.7e-51 205.3 120 88.3
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-49 199.9 138 79.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 8.0e-45 184.9 179 59.2
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.0e-44 182.6 118 83.1
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.3e-36 156.8 191 50.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-33 147.9 141 61.0
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.8e-28 128.6 96 67.7
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.0e-24 117.1 69 88.4


User provided reference genes

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