Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-144 516.5 257 100.0
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-60 237.3 196 66.8
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-60 237.3 196 66.8
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-56 224.2 196 61.7
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.8e-56 221.9 196 60.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 7.6e-56 221.5 196 61.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.2e-55 219.9 196 60.7
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.9e-55 218.8 196 60.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 6.4e-55 218.4 196 60.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 6.4e-55 218.4 196 60.7
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.4e-55 218.4 196 59.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 8.4e-55 218.0 201 58.2
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 8.4e-55 218.0 199 58.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-54 217.6 193 60.6
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.4e-54 217.2 196 59.2
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.4e-54 217.2 196 58.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.4e-54 217.2 193 60.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.4e-54 217.2 196 59.2
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.9e-54 216.9 196 58.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.4e-54 216.5 196 59.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.4e-54 216.5 196 59.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.4e-54 216.5 199 58.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.4e-54 216.5 196 59.2
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.4e-54 216.5 196 60.7
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.2e-54 216.1 201 58.7
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 3.2e-54 216.1 196 59.2
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 3.2e-54 216.1 193 61.1
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 3.2e-54 216.1 196 59.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.2e-54 215.7 193 60.6
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.4e-54 215.3 196 59.7
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.4e-54 215.3 193 60.1
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.4e-54 215.3 196 58.2
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 5.4e-54 215.3 196 60.2
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 7.1e-54 214.9 196 58.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 9.3e-54 214.5 196 59.2
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.2e-53 214.2 199 59.3
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.2e-53 214.2 196 59.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.6e-53 213.8 196 58.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.6e-53 213.8 196 59.2
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.6e-53 213.8 196 59.2
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.6e-53 213.8 196 59.7
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.7e-53 213.0 167 65.3
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.5e-53 212.6 196 58.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.5e-53 212.6 196 58.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.5e-53 212.6 196 59.2
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.6e-53 212.2 196 57.7
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 4.6e-53 212.2 196 57.1
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 6.0e-53 211.8 196 58.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.9e-53 211.5 196 56.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 7.9e-53 211.5 196 56.1
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 7.9e-53 211.5 196 58.2
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.0e-52 211.1 196 57.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.0e-52 211.1 196 56.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.0e-52 211.1 196 58.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.0e-52 211.1 196 56.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.0e-52 211.1 211 55.0
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.3e-52 210.7 196 57.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.3e-52 210.7 202 56.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.3e-52 210.7 196 57.1
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.3e-52 210.7 193 59.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.8e-52 210.3 196 57.1
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.8e-52 210.3 196 58.2
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.8e-52 210.3 196 56.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.8e-52 210.3 196 57.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.3e-52 209.9 200 57.5
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.3e-52 209.9 196 56.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.0e-52 209.5 202 55.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.9e-52 209.1 196 58.2
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.9e-52 209.1 196 57.7
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.9e-52 209.1 196 57.7
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.1e-52 208.8 196 55.6
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 5.1e-52 208.8 196 57.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.1e-52 208.8 196 56.1
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 5.1e-52 208.8 196 56.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 5.1e-52 208.8 196 56.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 6.7e-52 208.4 196 56.1
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.7e-52 208.4 196 56.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 6.7e-52 208.4 207 53.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.7e-52 208.4 196 57.7
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-51 206.8 185 58.9
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.5e-51 206.5 196 56.1
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.5e-51 206.5 202 55.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.3e-51 205.7 196 55.1
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 7.4e-51 204.9 196 54.6
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.3e-50 204.1 196 55.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.1e-50 203.4 218 52.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.8e-50 203.0 196 55.6
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.8e-50 203.0 196 55.6
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.7e-50 202.6 199 55.3
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.8e-50 202.2 230 50.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.8e-50 202.2 230 50.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 6.2e-50 201.8 193 57.5
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.1e-49 201.1 196 55.1
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.1e-49 201.1 196 55.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-49 200.7 196 54.6
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-49 200.7 196 54.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.4e-49 200.7 196 54.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.4e-49 200.7 196 54.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.4e-49 200.7 196 54.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.4e-49 199.9 195 56.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.1e-49 199.5 196 54.1
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.1e-49 199.5 196 54.1
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.0e-49 199.1 196 56.1
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 4.0e-49 199.1 196 54.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.0e-49 199.1 202 54.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 5.3e-49 198.7 196 55.6
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 6.9e-49 198.4 196 54.1
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 6.9e-49 198.4 196 53.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 9.0e-49 198.0 196 54.1
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.4e-48 196.1 196 54.1
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.3e-47 194.1 193 54.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 4.9e-47 192.2 196 53.6
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.4e-47 191.8 196 53.6
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.4e-47 191.4 208 51.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.2e-46 189.1 196 52.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.7e-45 186.4 197 48.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 6.0e-45 185.3 196 51.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.1e-44 182.2 181 56.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.1e-42 176.8 185 54.1
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-42 176.0 188 52.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.7e-42 176.0 188 52.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.7e-42 176.0 100 88.0
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.8e-42 175.6 203 49.3
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 8.2e-42 174.9 99 85.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.0e-41 172.6 95 89.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 9.0e-41 171.4 95 88.4
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 9.0e-41 171.4 95 88.4
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.5e-40 169.1 95 87.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 7.6e-40 168.3 95 87.4
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 5.1e-36 155.6 94 81.9
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.9e-31 139.8 75 85.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.2e-30 136.0 162 45.7
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-29 134.4 196 43.9
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 7.9e-29 131.7 183 44.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 7.4e-27 125.2 72 84.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.8e-25 120.6 218 31.7
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.5e-24 115.9 150 44.7
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.0e-23 114.8 191 35.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.9e-20 102.8 188 31.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.7e-20 102.1 95 60.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-12 77.8 65 60.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 7.4e-11 72.0 42 73.8
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 9.7e-11 71.6 42 73.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.8e-10 69.3 73 45.2
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.0e-08 63.9 134 33.6
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 4.5e-08 62.8 44 59.1
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.7e-07 60.8 47 57.4
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.1e-06 58.2 35 71.4


User provided reference genes

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