Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 1.1e-189 666.4 331 100.0
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 1.3e-185 652.9 330 97.9
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 4.1e-139 498.4 345 72.5
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.1e-138 496.1 346 72.8
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 9.6e-136 487.3 338 71.0
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 9.6e-136 487.3 345 70.7
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.1e-134 482.3 344 69.8
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 4.0e-134 481.9 343 69.7
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 6.8e-134 481.1 344 71.2
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.5e-133 479.9 345 69.3
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.4e-133 478.8 343 69.1
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 5.4e-131 471.5 334 70.4
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 2.7e-130 469.2 344 68.6
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.3e-129 466.8 345 69.9
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 8.7e-129 464.2 343 68.2
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 4.3e-128 461.8 335 68.4
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 5.6e-128 461.5 334 69.2
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.3e-127 460.3 343 66.8
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 3.6e-127 458.8 336 68.2
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 3.6e-127 458.8 344 68.0
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 6.2e-127 458.0 343 65.9
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 1.1e-126 457.2 336 67.9
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.1e-126 457.2 344 66.9
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 3.1e-126 455.7 343 68.2
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 4.0e-126 455.3 343 65.9
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.5e-125 453.4 345 67.0
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.6e-125 452.6 337 68.8
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 4.4e-125 451.8 338 67.5
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 7.6e-125 451.1 349 66.8
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 7.6e-125 451.1 343 66.5
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 7.6e-125 451.1 346 67.6
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 9.9e-125 450.7 349 64.5
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.3e-124 450.3 348 66.4
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 1.3e-124 450.3 338 67.2
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 2.2e-124 449.5 337 66.8
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.2e-124 449.5 349 66.5
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.8e-124 448.7 345 64.9
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 3.8e-124 448.7 343 66.2
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 3.8e-124 448.7 332 67.8
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.4e-124 448.0 349 66.8
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 6.4e-124 448.0 346 65.0
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 8.4e-124 447.6 345 64.6
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 8.4e-124 447.6 345 65.2
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 8.4e-124 447.6 343 65.6
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.1e-123 447.2 341 66.0
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.1e-123 447.2 341 66.0
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.1e-123 447.2 350 65.1
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.4e-123 446.8 337 67.4
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 1.4e-123 446.8 341 64.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.9e-123 446.4 343 66.5
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 2.4e-123 446.0 343 64.7
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 9.3e-123 444.1 337 67.7
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 9.3e-123 444.1 345 65.2
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 1.6e-122 443.4 346 64.2
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.1e-122 443.0 292 72.9
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 2.7e-122 442.6 343 65.3
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.5e-122 442.2 344 64.8
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 3.5e-122 442.2 343 64.4
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 3.5e-122 442.2 346 65.0
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 6.0e-122 441.4 343 65.6
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 6.0e-122 441.4 345 64.9
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 7.9e-122 441.0 344 66.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 7.9e-122 441.0 338 65.4
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 1.0e-121 440.7 344 65.7
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.3e-121 440.3 337 67.1
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.3e-121 440.3 342 65.8
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.7e-121 439.9 349 65.0
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 2.3e-121 439.5 350 65.4
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.0e-121 439.1 346 64.5
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 3.0e-121 439.1 342 65.5
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 5.1e-121 438.3 345 64.9
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 1.1e-120 437.2 349 63.9
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.1e-120 437.2 343 64.7
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 1.9e-120 436.4 334 64.7
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.6e-119 433.3 343 63.6
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.6e-119 433.3 339 63.4
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.6e-119 433.3 337 66.2
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.1e-118 430.6 352 61.6
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.1e-118 430.6 343 63.3
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-118 430.6 336 65.2
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.8e-118 429.9 344 63.7
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.8e-118 429.9 331 65.6
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 3.1e-118 429.1 345 62.6
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.1e-118 429.1 343 63.8
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 5.3e-118 428.3 373 60.9
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 6.9e-118 427.9 385 59.7
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 9.0e-118 427.6 346 62.4
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.2e-117 427.2 371 60.9
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 2.0e-117 426.4 347 62.2
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.4e-117 425.6 372 60.5
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 5.8e-117 424.9 352 61.4
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.7e-116 423.3 345 62.0
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 2.2e-116 422.9 350 62.0
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 8.4e-116 421.0 326 62.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 2.4e-115 419.5 349 63.0
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 3.2e-115 419.1 352 62.5
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.6e-114 416.8 412 55.6
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.3e-113 413.7 357 59.1
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 3.9e-113 412.1 339 61.9
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.1e-112 410.6 357 59.4
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.5e-112 410.2 356 59.3
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 2.1e-111 406.4 322 63.4
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.8e-111 406.0 322 63.4
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 8.1e-111 404.4 318 64.8
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.5e-109 400.2 350 60.3
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.4e-109 399.1 350 60.0
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.4e-109 399.1 350 60.0
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.5e-109 398.7 343 60.6
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 6.5e-108 394.8 382 57.6
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 4.2e-107 392.1 334 60.8
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 7.1e-107 391.3 344 59.9
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.3e-105 386.3 274 69.7
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 3.0e-105 386.0 315 62.5
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 5.7e-104 381.7 355 55.8
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 9.6e-104 380.9 355 55.5
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 4.8e-103 378.6 260 71.5
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 9.3e-99 364.4 264 68.6
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 7.9e-98 361.3 250 70.4
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 4.3e-96 355.5 354 52.3
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.4e-94 349.7 244 68.9
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 2.2e-92 343.2 275 65.1
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 4.8e-87 325.5 367 50.1
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.1e-86 322.8 348 51.4
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.7e-82 309.7 346 51.2
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 1.1e-78 297.7 312 50.6
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.7e-71 272.7 216 64.8
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 2.9e-68 263.1 261 53.3
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.8e-65 253.8 338 46.2
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 1.6e-58 230.7 161 72.0
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 3.6e-50 203.0 148 64.2
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 3.6e-50 203.0 236 50.4
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 4.0e-49 199.5 502 30.3
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.7e-47 194.1 165 63.0
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 3.6e-42 176.4 187 54.5
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 1.5e-40 171.0 138 60.9
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 7.5e-40 168.7 133 62.4
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 2.0e-37 160.6 116 69.0
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 1.1e-35 154.8 125 64.8
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 4.7e-34 149.4 117 67.5
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 5.2e-33 146.0 111 64.9
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 6.8e-33 145.6 149 54.4
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 9.9e-24 115.2 212 35.4
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 9.9e-24 115.2 136 45.6
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 3.8e-23 113.2 170 45.3
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-19 101.7 138 43.5
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-19 101.7 138 43.5
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-19 101.7 138 43.5
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-19 101.7 138 43.5
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 1.5e-19 101.3 83 63.9
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 4.7e-18 96.3 89 56.2
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.4e-17 94.7 97 47.4
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 2.4e-17 94.0 61 70.5
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 1.2e-16 91.7 73 67.1
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 2.0e-16 90.9 79 57.0
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.6e-16 90.5 76 67.1
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 3.8e-15 86.7 53 75.5
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 4.9e-15 86.3 80 61.2
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 3.2e-14 83.6 109 40.4
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 2.1e-13 80.9 72 54.2
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 2.7e-13 80.5 249 31.7
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 3.9e-12 76.6 73 50.7
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 3.3e-11 73.6 74 54.1
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 1.8e-09 67.8 66 51.5
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 4.0e-09 66.6 59 54.2
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 5.8e-08 62.8 34 82.4
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.3e-07 61.6 34 79.4
Sed0003035 Sechium edule HOM05D002688 ORTHO05D002911 1.3e-07 61.6 115 27.8
ClCG09G004460 Citrullus lanatus HOM05D002688 ORTHO05D002911 1.7e-07 61.2 115 27.8
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 2.2e-07 60.8 71 45.1
CsaV3_7G030680 Cucumis sativus L. HOM05D002688 ORTHO05D002911 2.9e-07 60.5 115 27.8
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 3.8e-07 60.1 41 63.4
Gohir.D08G162500 Gossypium hirsutum HOM05D002688 ORTHO05D002911 8.4e-07 58.9 107 30.8
Gorai.004G168900 Gossypium raimondii HOM05D002688 ORTHO05D002911 8.4e-07 58.9 107 30.8
Hma1.2p1_0685F.1_g203300 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 1.9e-06 57.8 108 26.9
RcHm_v2.0_Chr1g0318181 Rosa chinensis HOM05D002688 ORTHO05D002911 3.2e-06 57.0 119 26.1
SHI07811 Sapria himalayana HOM05D004236 ORTHO05D004903 3.2e-06 57.0 43 58.1
unitig_736.g22563 Utricularia gibba HOM05D004236 ORTHO05D004903 7.1e-06 55.8 47 61.7
Aqoxy5G01730 Aquilegia oxysepala HOM05D007147 ORTHO05D009166 9.3e-06 55.5 81 38.3
FvH4_7g01670 Fragaria vesca HOM05D002688 ORTHO05D002911 9.3e-06 55.5 114 27.2
PSO339G1014 Papaver somniferum HOM05D002688 ORTHO05D002911 9.3e-06 55.5 107 26.2
PSO384G1250 Papaver somniferum HOM05D002688 ORTHO05D002911 9.3e-06 55.5 107 26.2


User provided reference genes

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