Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.4e-117 426.4 226 100.0
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-114 416.8 226 98.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 9.3e-74 280.8 231 70.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.6e-73 278.5 229 70.7
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.7e-72 276.6 203 73.9
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 3.9e-72 275.4 203 73.9
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 2.5e-71 272.7 226 69.9
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.3e-71 271.9 228 67.5
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 7.3e-71 271.2 235 66.8
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 9.6e-71 270.8 230 68.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.1e-70 269.6 187 77.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 4.8e-70 268.5 184 79.9
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.2e-70 268.1 229 65.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 6.2e-70 268.1 228 69.3
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.1e-70 267.7 230 65.7
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-69 267.3 187 77.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.1e-69 267.3 232 69.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.1e-69 267.3 225 71.1
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.9e-69 264.6 227 65.6
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 9.0e-69 264.2 225 68.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.0e-68 263.1 224 67.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.4e-68 262.3 232 65.5
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 5.8e-68 261.5 185 75.1
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 7.6e-68 261.2 230 66.5
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.3e-67 260.4 225 68.4
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.2e-67 259.6 204 70.6
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 2.9e-67 259.2 227 66.5
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 6.4e-67 258.1 184 75.5
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.4e-67 258.1 251 62.5
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 8.4e-67 257.7 225 68.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.1e-66 257.3 203 71.4
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.9e-66 256.5 228 62.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.4e-66 256.1 231 66.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.2e-66 255.8 168 82.1
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 4.2e-66 255.4 235 62.6
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 5.5e-66 255.0 227 65.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 7.1e-66 254.6 232 67.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 7.1e-66 254.6 232 67.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 9.3e-66 254.2 225 67.6
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 9.3e-66 254.2 227 65.6
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 9.3e-66 254.2 235 61.7
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.6e-65 253.4 240 62.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.5e-65 252.3 225 66.7
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.6e-65 251.9 243 62.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 7.9e-65 251.1 222 64.4
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.3e-64 250.4 262 59.2
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.8e-64 250.0 185 75.7
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.3e-64 249.6 178 75.3
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.3e-64 249.6 225 66.2
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 3.0e-64 249.2 185 74.6
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.0e-64 249.2 225 66.2
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.1e-63 247.3 185 72.4
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.5e-63 246.1 181 76.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.3e-62 243.8 186 71.5
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 2.8e-62 242.7 234 62.4
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 3.7e-62 242.3 189 72.0
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 3.7e-62 242.3 188 71.3
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.7e-62 242.3 227 62.1
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 4.8e-62 241.9 180 73.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.2e-62 241.5 239 57.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.1e-61 240.7 168 78.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.4e-61 240.4 188 69.1
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.8e-61 240.0 226 59.3
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.4e-61 239.6 188 68.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.4e-61 239.6 187 68.4
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.4e-61 239.6 266 55.3
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.3e-61 238.4 234 62.0
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.3e-61 238.4 180 73.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 6.9e-61 238.0 181 71.8
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 9.0e-61 237.7 180 72.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 9.0e-61 237.7 182 75.8
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.6e-60 236.1 188 67.6
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.6e-60 236.1 207 63.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 3.4e-60 235.7 228 61.4
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 7.6e-60 234.6 228 60.5
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 7.6e-60 234.6 228 60.5
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.7e-59 233.4 228 60.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.2e-59 233.0 230 59.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.9e-59 232.6 188 68.1
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.9e-59 231.9 228 59.6
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 4.9e-59 231.9 183 68.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 6.5e-59 231.5 228 61.0
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 6.5e-59 231.5 181 72.9
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.1e-58 230.7 228 59.6
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.4e-58 230.3 228 60.1
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 195 68.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 195 68.2
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 3.2e-58 229.2 187 71.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 3.2e-58 229.2 250 57.2
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 9.3e-58 227.6 229 59.0
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.6e-57 226.9 202 63.4
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.7e-57 226.1 200 60.5
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 7.9e-57 224.6 244 54.5
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 8.7e-56 221.1 230 58.3
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.5e-55 219.5 186 66.1
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.7e-54 215.7 243 58.0
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 2.4e-53 213.0 175 65.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.1e-53 212.6 182 64.8
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 4.1e-53 212.2 207 59.9
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.1e-50 204.1 228 53.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.9e-50 203.4 154 72.1
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.2e-50 202.6 150 75.3
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.2e-50 202.6 255 49.8
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.1e-49 199.9 190 59.5
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 3.3e-47 192.6 176 59.1
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.7e-46 189.1 232 52.2
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.3e-43 180.6 207 48.8
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.7e-43 180.3 130 73.1
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.2e-41 174.1 130 76.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.6e-41 172.6 143 62.9
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 2.4e-37 159.8 183 51.4
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 7.2e-34 148.3 253 44.7
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.1e-33 146.7 110 67.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.6e-33 146.0 162 51.2
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.0e-32 142.9 98 71.4
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.7e-31 138.7 98 68.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.4e-29 134.0 93 68.8
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.3e-27 127.5 142 50.7
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.7e-27 127.1 123 53.7
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.9e-26 123.6 116 57.8
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.6e-25 120.6 136 51.5
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 8.8e-24 114.8 183 42.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 8.8e-24 114.8 245 36.3
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 8.8e-24 114.8 97 70.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.0e-23 113.6 207 42.0
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.7e-23 112.1 73 74.0
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.8e-22 109.8 79 64.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.4e-21 106.7 223 36.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 7.0e-21 105.1 192 37.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.2e-20 104.4 192 37.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.6e-20 104.0 153 45.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.3e-19 100.9 163 42.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.6e-17 94.0 82 61.0
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 8.0e-17 91.7 159 38.4
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.9e-11 73.2 133 38.3
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.2e-08 62.4 97 46.4
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 8.8e-08 61.6 114 37.7
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.5e-07 60.8 122 32.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.2e-06 57.0 51 62.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 2.2e-06 57.0 53 69.8
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 8.3e-06 55.1 103 41.7


User provided reference genes

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