Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1745 Papaver somniferum HOM05D008047 ORTHO05D009832 7.4e-72 274.6 250 100.0
PSO017G1597 Papaver somniferum HOM05D008047 ORTHO05D009832 1.4e-59 233.8 253 92.5
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 6.8e-17 92.0 56 73.2
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 8.8e-17 91.7 56 73.2
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 1.2e-16 91.3 56 75.0
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.2e-16 91.3 56 75.0
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.2e-16 91.3 56 75.0
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.2e-16 91.3 56 75.0
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.2e-16 91.3 56 75.0
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 1.2e-16 91.3 56 75.0
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 2.0e-16 90.5 129 39.5
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 1.3e-15 87.8 57 68.4
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 1.7e-15 87.4 56 69.6
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 1.7e-15 87.4 56 71.4
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 2.2e-15 87.0 57 64.9
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 2.8e-15 86.7 57 68.4
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 3.7e-15 86.3 56 66.1
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 4.8e-15 85.9 55 69.1
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 4.8e-15 85.9 55 69.1
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 6.3e-15 85.5 56 67.9
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 8.3e-15 85.1 56 69.6
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 8.3e-15 85.1 57 66.7
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 1.4e-14 84.3 59 67.8
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 1.8e-14 84.0 55 65.5
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 2.4e-14 83.6 57 63.2
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 3.1e-14 83.2 55 69.1
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 3.1e-14 83.2 55 69.1
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 3.1e-14 83.2 55 69.1
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 4.1e-14 82.8 55 69.1
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 4.1e-14 82.8 56 66.1
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 5.4e-14 82.4 57 61.4
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 7.0e-14 82.0 55 67.3
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 7.0e-14 82.0 55 67.3
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 7.0e-14 82.0 57 63.2
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 7.0e-14 82.0 60 60.0
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 7.0e-14 82.0 55 67.3
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 9.1e-14 81.6 55 67.3
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 9.1e-14 81.6 57 61.4
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 9.1e-14 81.6 55 67.3
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 1.6e-13 80.9 56 60.7
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 5.9e-13 79.0 130 34.6
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 7.7e-13 78.6 56 60.7
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 7.7e-13 78.6 56 60.7
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 1.0e-12 78.2 55 63.6
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 1.0e-12 78.2 55 63.6
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 1.0e-12 78.2 56 60.7
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 1.3e-12 77.8 55 61.8
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 1.7e-12 77.4 56 58.9
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 1.7e-12 77.4 55 61.8
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 1.7e-12 77.4 56 57.1
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 1.7e-12 77.4 56 62.5
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 2.3e-12 77.0 56 57.1
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 2.9e-12 76.6 57 59.6
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 2.9e-12 76.6 57 57.9
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 3.8e-12 76.3 57 59.6
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 8.6e-12 75.1 56 58.9
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 1.1e-11 74.7 57 56.1
Potri.013G131500 Populus trichocarpa HOM05D008047 ORTHO05D009832 1.1e-11 74.7 56 58.9
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 1.5e-11 74.3 56 57.1
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 1.9e-11 73.9 55 63.6
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.2e-11 72.8 56 60.7
CANSAT64G2909 Cannabis sativa HOM05D008047 ORTHO05D009832 5.5e-11 72.4 56 58.9
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 5.5e-11 72.4 56 57.1
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 7.2e-11 72.0 56 53.6
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 1.2e-10 71.2 56 51.8
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 2.1e-10 70.5 59 54.2
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 3.6e-10 69.7 56 55.4
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 4.7e-10 69.3 56 57.1
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 4.7e-10 69.3 56 57.1
Sabra13G0111000 Salix brachista HOM05D008047 ORTHO05D009832 6.1e-10 68.9 57 52.6
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 8.0e-10 68.6 56 55.4
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 1.4e-09 67.8 56 53.6
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 1.8e-09 67.4 56 50.0
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 2.3e-09 67.0 56 53.6
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 2.3e-09 67.0 56 50.0
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 2.3e-09 67.0 56 55.4
CSS0048801 Camellia sinensis var. sinensis HOM05D008047 ORTHO05D009832 3.0e-09 66.6 49 65.3
C09p63200 Brassica napus HOM05D008047 ORTHO05D009832 4.0e-09 66.2 47 63.8
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 4.0e-09 66.2 56 55.4
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 6.8e-09 65.5 56 55.4
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 8.8e-09 65.1 57 56.1
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 4.4e-08 62.8 128 33.6
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 4.4e-08 62.8 128 33.6
PGR142G1223 Punica granatum HOM05D008047 ORTHO05D009832 7.5e-08 62.0 56 51.8
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 2.2e-07 60.5 48 56.2
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 5.4e-06 55.8 45 55.6
SGA_v2.0_scaffold122G33226 Striga asiatica HOM05D008047 ORTHO05D009832 5.4e-06 55.8 58 51.7


User provided reference genes

Program Settings