Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.2e-40 169.5 90 100.0
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 1.9e-33 145.6 88 84.1
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 9.5e-30 133.3 86 74.4
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 1.2e-29 132.9 86 73.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 1.2e-29 132.9 86 73.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 1.2e-29 132.9 86 73.3
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.6e-29 132.5 86 73.3
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.1e-29 132.1 86 73.3
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.4e-28 129.4 85 74.1
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.8e-28 129.0 86 75.6
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 2.3e-28 128.6 85 74.1
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 5.2e-28 127.5 82 75.6
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 6.8e-28 127.1 85 74.1
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.2e-27 126.3 83 72.3
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.2e-27 126.3 83 74.7
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.2e-27 126.3 86 70.9
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.2e-27 126.3 83 73.5
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.2e-27 126.3 85 74.1
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.5e-27 125.9 83 74.7
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 2.0e-27 125.6 82 73.2
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.6e-27 125.2 89 71.9
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.6e-27 125.2 86 70.9
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.6e-27 125.2 85 72.9
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 4.4e-27 124.4 86 74.4
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 5.8e-27 124.0 86 70.9
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.8e-27 124.0 86 68.6
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 5.8e-27 124.0 85 71.8
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 7.5e-27 123.6 85 67.1
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.5e-27 123.6 85 67.1
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 7.5e-27 123.6 83 68.7
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 7.5e-27 123.6 83 71.1
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 7.5e-27 123.6 86 68.6
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 9.9e-27 123.2 86 67.4
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 9.9e-27 123.2 84 70.2
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 9.9e-27 123.2 86 68.6
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.3e-26 122.9 86 70.9
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 86 67.4
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 1.7e-26 122.5 86 67.4
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.7e-26 122.5 85 68.2
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.7e-26 122.5 85 70.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.2e-26 122.1 84 69.0
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 2.2e-26 122.1 86 69.8
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.2e-26 122.1 85 70.6
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.9e-26 121.7 86 70.9
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 3.7e-26 121.3 85 65.9
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 3.7e-26 121.3 85 68.2
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 4.9e-26 120.9 87 71.3
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 4.9e-26 120.9 86 66.3
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 6.4e-26 120.6 85 69.4
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 6.4e-26 120.6 82 72.0
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.1e-25 119.8 86 66.3
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.1e-25 119.8 82 73.2
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.4e-25 119.4 86 67.4
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.4e-25 118.6 85 67.1
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.4e-25 118.6 85 64.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.4e-25 118.6 85 70.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.4e-25 118.6 87 66.7
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 4.1e-25 117.9 88 67.0
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 4.1e-25 117.9 86 64.0
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 4.1e-25 117.9 86 65.1
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 4.1e-25 117.9 83 71.1
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.4e-25 117.5 85 63.5
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.4e-25 117.5 82 68.3
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 7.1e-25 117.1 86 66.3
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 7.1e-25 117.1 84 70.2
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.1e-24 115.5 85 63.5
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.7e-24 115.2 83 66.3
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.7e-24 115.2 82 67.1
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.7e-24 115.2 82 67.1
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.7e-24 115.2 85 65.9
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 2.7e-24 115.2 89 66.3
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 3.5e-24 114.8 87 64.4
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 3.5e-24 114.8 85 62.4
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.5e-24 114.8 83 66.3
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.5e-24 114.8 85 65.9
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.6e-24 114.4 82 69.5
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.0e-24 114.0 86 60.5
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.7e-23 112.5 79 73.4
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.7e-23 112.5 83 62.7
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 3.0e-23 111.7 83 62.7
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 3.0e-23 111.7 84 61.9
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 3.9e-23 111.3 85 65.9
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 3.9e-23 111.3 85 62.4
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.1e-22 109.8 85 64.7
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.5e-22 109.4 87 62.1
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.5e-22 109.4 87 62.1
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.5e-22 109.4 81 65.4
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.9e-22 109.0 78 69.2
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 9.5e-22 106.7 72 70.8
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.6e-21 104.8 81 63.0
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 6.2e-21 104.0 85 60.0
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 3.1e-20 101.7 83 60.2
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 4.0e-20 101.3 69 69.6
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 4.0e-20 101.3 81 63.0
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 6.8e-20 100.5 62 77.4
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.5e-19 99.4 86 53.5
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.0e-19 99.0 81 56.8
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.0e-19 99.0 81 56.8
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 2.6e-19 98.6 80 63.8
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.6e-19 98.6 82 56.1
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 2.6e-19 98.6 88 54.5
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 2.6e-19 98.6 68 66.2
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 4.4e-19 97.8 82 56.1
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 4.4e-19 97.8 82 57.3
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 5.8e-19 97.4 82 56.1
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 7.6e-19 97.1 82 56.1
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 7.6e-19 97.1 82 56.1
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.7e-18 95.9 80 57.5
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 1.7e-18 95.9 81 55.6
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.7e-18 95.9 82 54.9
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.2e-18 95.5 61 73.8
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.9e-18 95.1 83 53.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.9e-18 95.1 67 67.2
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-18 94.7 82 53.7
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-18 94.7 81 55.6
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 6.4e-18 94.0 81 54.3
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 6.4e-18 94.0 82 53.7
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 8.4e-18 93.6 81 54.3
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 8.4e-18 93.6 81 54.3
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.1e-17 93.2 85 49.4
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 2.4e-17 92.0 81 54.3
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.2e-17 91.7 81 54.3
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-17 91.7 81 54.3
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-17 91.7 81 54.3
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.2e-17 91.7 81 54.3
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 3.2e-17 91.7 81 53.1
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 4.2e-17 91.3 81 51.9
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 4.2e-17 91.3 81 51.9
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 5.4e-17 90.9 81 53.1
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 7.1e-17 90.5 82 51.2
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.6e-16 89.4 88 52.3
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-16 89.0 84 52.4
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.0e-15 86.7 82 51.2
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 3.0e-15 85.1 75 56.0
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.9e-15 84.7 85 47.1
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 6.6e-15 84.0 72 56.9
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 6.6e-15 84.0 72 56.9
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 8.7e-15 83.6 72 56.9
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 3.3e-14 81.6 59 67.8
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 4.3e-14 81.3 72 54.2
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.2e-13 79.7 81 53.1
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 6.9e-12 73.9 57 63.2
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.6e-11 72.0 65 53.8
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 3.8e-10 68.2 73 47.9
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 4.9e-10 67.8 79 49.4
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.4e-09 66.2 81 46.9
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.9e-09 65.9 55 58.2
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.7e-08 62.0 74 41.9
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.3e-07 58.9 82 39.0
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 3.9e-07 58.2 44 63.6
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 5.1e-07 57.8 35 77.1


User provided reference genes

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