Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.8e-160 567.8 284 100.0
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.2e-150 536.6 284 95.4
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-150 535.4 284 94.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 5.8e-150 534.3 284 93.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 9.8e-105 384.0 272 73.5
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.3e-101 373.6 279 71.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.4e-95 353.6 281 66.2
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.8e-95 353.2 277 65.7
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.8e-95 353.2 262 69.8
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.6e-94 348.6 280 66.4
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.9e-94 348.2 280 66.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.9e-94 348.2 276 64.9
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.0e-93 347.4 272 68.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.0e-93 347.4 276 68.8
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 2.5e-92 342.8 280 65.7
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.5e-92 342.8 280 65.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.3e-92 342.4 254 66.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.3e-92 342.0 272 67.3
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 9.5e-92 340.9 297 65.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.1e-91 339.7 289 64.4
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.8e-91 339.3 253 70.4
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 3.6e-91 339.0 282 65.2
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 6.2e-91 338.2 253 69.6
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.4e-90 337.0 285 65.3
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.1e-90 335.9 280 65.0
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 6.8e-90 334.7 281 64.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.9e-90 334.3 184 90.8
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.0e-89 333.2 261 67.8
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 2.0e-89 333.2 210 79.0
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.0e-89 333.2 210 79.0
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.6e-89 332.8 280 64.6
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 4.4e-89 332.0 280 64.6
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 5.8e-89 331.6 247 69.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.5e-89 331.3 289 62.3
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.5e-89 331.3 242 71.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 7.5e-89 331.3 210 77.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-88 330.5 210 78.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.2e-88 329.7 254 68.5
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.7e-88 328.9 210 77.6
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 8.3e-88 327.8 281 62.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.4e-87 327.0 250 67.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.4e-87 327.0 289 63.3
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.1e-87 325.5 229 73.8
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 7.0e-87 324.7 263 65.4
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 9.2e-87 324.3 250 66.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.2e-86 323.9 271 65.3
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.0e-86 323.2 283 62.9
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.0e-86 323.2 264 65.5
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.7e-86 322.8 276 62.7
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.7e-86 322.8 280 61.1
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.7e-86 322.8 268 65.7
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 3.5e-86 322.4 263 65.4
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 3.5e-86 322.4 269 66.5
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 4.6e-86 322.0 294 60.9
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.6e-86 322.0 294 60.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.7e-85 320.1 195 82.1
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.0e-85 319.3 227 72.7
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.9e-85 318.9 286 62.6
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.9e-85 318.9 282 63.5
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 5.0e-85 318.5 206 76.2
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.5e-84 317.0 258 65.1
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.9e-84 316.6 207 76.3
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.3e-84 315.5 267 63.7
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 5.6e-84 315.1 274 62.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.2e-83 313.9 275 61.1
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.2e-83 313.9 267 63.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.1e-83 313.2 215 70.2
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.1e-83 313.2 270 62.6
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.8e-83 312.8 198 79.3
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.8e-83 312.8 204 75.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 8.1e-83 311.2 249 67.9
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-82 310.8 278 59.0
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.1e-82 310.8 198 78.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.1e-82 310.8 204 76.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.4e-82 310.5 204 75.5
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.4e-82 310.5 203 78.3
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.8e-82 310.1 213 74.2
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.3e-82 309.7 204 75.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.3e-82 309.7 250 64.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.3e-82 309.7 238 66.4
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.3e-82 309.7 231 69.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.0e-82 308.9 204 76.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 4.0e-82 308.9 217 71.4
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.8e-82 308.1 221 71.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 6.8e-82 308.1 216 72.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.9e-82 307.8 204 75.5
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.2e-81 307.4 204 75.0
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.5e-81 307.0 197 77.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-81 306.6 198 77.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.0e-81 306.6 275 61.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.6e-81 306.2 198 77.3
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.4e-81 305.8 279 59.9
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 5.8e-81 305.1 281 60.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 5.8e-81 305.1 281 60.9
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.3e-80 303.9 205 75.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 2.2e-80 303.1 201 76.1
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-79 300.8 201 75.6
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-79 300.8 201 75.6
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.2e-79 299.3 210 72.9
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 5.4e-79 298.5 214 72.4
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.7e-78 296.2 193 77.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.5e-78 295.8 214 72.0
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.0e-78 295.0 177 81.9
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 7.8e-78 294.7 263 61.6
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 3.0e-77 292.7 177 81.9
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 8.6e-77 291.2 201 73.1
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 9.5e-76 287.7 205 70.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.6e-75 287.0 291 57.4
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 2.1e-75 286.6 178 80.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 3.6e-75 285.8 235 63.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 2.3e-74 283.1 200 71.0
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.1e-74 282.7 273 59.3
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.0e-74 282.3 202 73.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.8e-74 281.6 212 70.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.8e-73 278.5 204 72.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.2e-72 276.6 199 68.3
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.9e-72 276.2 179 77.1
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.4e-71 273.9 237 60.8
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 3.5e-70 269.2 220 63.2
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.3e-69 266.5 217 62.2
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.3e-68 262.3 220 62.3
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.4e-66 257.3 184 71.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.7e-64 250.4 225 56.9
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.2e-64 250.0 226 55.8
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.0e-62 241.9 223 53.8
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 4.3e-60 235.7 165 70.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 4.3e-60 235.7 165 70.9
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 5.6e-60 235.3 176 71.6
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 5.3e-58 228.8 215 60.0
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-56 223.8 265 51.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.5e-52 209.9 181 62.4
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 7.4e-52 208.4 284 45.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.1e-50 204.5 198 58.6
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 4.2e-47 192.6 135 69.6
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.3e-44 183.0 229 45.0
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-43 181.0 115 77.4
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.2e-43 178.7 114 76.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-41 174.5 199 47.2
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 2.1e-38 163.7 97 82.5
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 4.8e-35 152.5 216 43.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.9e-32 143.3 88 77.3
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.9e-31 140.6 195 46.7
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.3e-24 117.9 156 41.0
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 3.8e-24 116.3 196 40.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.8e-24 116.3 97 61.9
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 5.5e-23 112.5 211 36.0
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.8e-21 107.5 148 45.3
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 3.9e-21 106.3 70 71.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.7e-20 102.4 204 34.8
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.7e-19 100.9 205 33.7
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.3e-16 91.3 187 34.8
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.9e-16 90.1 66 65.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.6e-12 77.0 113 44.2
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 5.7e-12 75.9 65 55.4
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 3.5e-09 66.6 47 70.2
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.7e-08 64.3 67 56.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 3.8e-08 63.2 155 32.9
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 3.6e-06 56.6 55 54.5
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 3.6e-06 56.6 55 54.5


User provided reference genes

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