Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.2e-117 424.1 208 100.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.7e-74 283.1 146 96.6
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.5e-73 280.0 146 95.2
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 7.5e-62 241.1 137 83.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 3.7e-61 238.8 147 81.0
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 9.2e-60 234.2 136 85.3
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.6e-59 233.4 140 82.1
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 2.7e-59 232.6 147 77.6
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.7e-59 232.6 136 80.1
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.5e-59 232.3 131 83.2
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 5.9e-59 231.5 137 80.3
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 7.8e-59 231.1 137 81.8
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.8e-59 231.1 137 80.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.0e-58 230.7 145 75.2
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.3e-58 230.3 144 79.2
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.7e-58 229.9 155 75.5
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.7e-58 229.9 127 85.8
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.7e-58 229.9 140 79.3
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.3e-58 229.6 152 74.3
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.3e-58 229.6 150 75.3
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 2.3e-58 229.6 128 85.2
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.3e-58 229.6 137 78.8
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.9e-58 229.2 141 78.7
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.9e-58 229.2 132 82.6
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.9e-58 229.2 137 78.8
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 2.9e-58 229.2 139 80.6
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 2.9e-58 229.2 128 85.2
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 3.8e-58 228.8 141 78.7
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 3.8e-58 228.8 145 77.2
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.8e-58 228.8 137 80.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 5.0e-58 228.4 132 81.8
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.0e-58 228.4 140 78.6
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.0e-58 228.4 137 78.8
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 6.6e-58 228.0 140 77.9
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 6.6e-58 228.0 146 76.7
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 8.6e-58 227.6 141 78.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 8.6e-58 227.6 146 76.0
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.1e-57 227.3 136 80.1
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.1e-57 227.3 140 79.3
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.1e-57 227.3 138 81.2
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-57 227.3 138 79.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.5e-57 226.9 145 75.9
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.5e-57 226.9 148 75.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.9e-57 226.5 141 77.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.9e-57 226.5 141 77.3
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.9e-57 226.5 142 77.5
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.9e-57 226.5 138 81.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.9e-57 226.5 128 84.4
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.9e-57 226.5 136 80.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.5e-57 226.1 145 75.2
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.5e-57 226.1 140 78.6
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-57 226.1 146 74.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.5e-57 226.1 132 81.8
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.5e-57 226.1 132 81.8
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.5e-57 226.1 139 79.1
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.5e-57 226.1 154 73.4
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.3e-57 225.7 133 80.5
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 4.3e-57 225.3 141 77.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 4.3e-57 225.3 132 81.8
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-57 225.3 132 81.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-57 225.3 132 81.8
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-57 225.3 132 81.8
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 4.3e-57 225.3 150 76.0
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.6e-57 224.9 140 76.4
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.6e-57 224.9 132 81.1
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.6e-57 224.9 132 81.1
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.6e-57 224.9 137 78.1
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 7.3e-57 224.6 142 77.5
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.3e-57 224.6 140 76.4
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.5e-57 224.2 138 78.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 9.5e-57 224.2 144 77.1
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.2e-56 223.8 140 76.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-56 223.8 145 74.5
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.2e-56 223.8 154 73.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.2e-56 223.8 150 73.3
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.6e-56 223.4 140 76.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-56 223.4 145 74.5
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-56 223.4 145 74.5
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.6e-56 223.4 140 76.4
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 2.1e-56 223.0 140 76.4
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.1e-56 223.0 128 82.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.1e-56 223.0 140 77.1
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.1e-56 223.0 147 76.9
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.8e-56 222.6 137 77.4
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.8e-56 222.6 137 77.4
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.8e-56 222.6 153 71.2
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.6e-56 222.2 140 79.3
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.6e-56 222.2 145 73.8
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 4.7e-56 221.9 126 81.7
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 4.7e-56 221.9 126 81.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.7e-56 221.9 147 73.5
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 6.1e-56 221.5 144 75.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 6.1e-56 221.5 140 77.9
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.0e-56 221.1 137 76.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.0e-55 220.7 140 75.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.0e-55 220.7 150 74.0
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.0e-55 220.7 144 75.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-55 220.3 140 75.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.4e-55 220.3 150 74.0
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.8e-55 219.9 140 75.7
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.8e-55 219.9 140 75.7
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.8e-55 219.9 153 70.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.8e-55 219.9 153 70.6
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.8e-55 219.9 150 74.0
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.3e-55 219.5 154 70.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.3e-55 219.5 146 73.3
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.3e-55 219.5 140 75.7
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.3e-55 219.5 143 77.6
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 6.8e-55 218.0 136 77.2
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 6.8e-55 218.0 126 81.7
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.8e-55 218.0 140 77.1
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-54 216.9 128 80.5
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.0e-54 216.5 137 75.9
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.0e-54 216.5 128 82.0
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.4e-54 215.7 139 77.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 4.4e-54 215.3 150 73.3
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 5.8e-54 214.9 123 82.9
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 9.8e-54 214.2 133 75.9
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.7e-53 213.4 150 72.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.9e-53 212.6 151 70.2
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.3e-53 211.1 149 71.1
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-52 210.3 136 75.7
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.4e-52 210.3 136 75.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.4e-52 209.5 130 73.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.1e-52 208.8 135 72.6
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 5.4e-52 208.4 137 73.0
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.2e-51 207.2 135 71.9
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.2e-51 207.2 120 81.7
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.2e-51 207.2 132 74.2
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.2e-51 207.2 149 71.1
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.2e-51 207.2 128 78.9
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.6e-51 206.8 132 73.5
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.7e-51 206.1 130 73.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 3.5e-51 205.7 132 73.5
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 4.6e-51 205.3 132 73.5
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.0e-50 204.1 130 72.3
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.3e-50 203.8 140 70.7
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.9e-50 202.2 145 69.0
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 5.6e-49 198.4 201 54.7
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.2e-48 194.9 146 64.4
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 7.0e-44 181.4 126 71.4
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.7e-43 179.5 144 64.6
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.9e-42 175.6 111 74.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.3e-39 166.4 132 57.6
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.0e-39 165.6 140 60.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 8.3e-37 157.9 144 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 5.6e-33 145.2 111 61.3
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 6.8e-31 138.3 111 57.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.6e-30 136.3 110 57.3
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.8e-29 132.5 110 54.5
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 6.4e-29 131.7 81 80.2
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.2e-28 127.9 131 53.4
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 5.1e-26 122.1 81 69.1
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 6.2e-24 115.2 110 48.2
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.8e-23 113.6 123 52.0
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-20 103.6 139 39.6
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-20 103.6 139 39.6
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.4e-20 103.2 170 34.7
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 9.3e-20 101.3 103 53.4
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 9.3e-20 101.3 80 63.8
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-19 100.9 85 57.6
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-19 100.5 65 76.9
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 6.0e-19 98.6 63 77.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 7.8e-19 98.2 67 68.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.1e-18 95.5 57 73.7
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 5.1e-18 95.5 56 75.0
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.1e-18 95.5 122 38.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.3e-17 92.4 53 81.1
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.3e-16 90.9 79 63.3
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 8.1e-16 88.2 66 66.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.4e-12 75.5 55 63.6
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.0e-10 69.7 65 52.3
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 5.1e-10 68.9 86 40.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 5.1e-10 68.9 86 40.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 7.4e-09 65.1 76 38.2
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.1e-07 61.2 95 40.0


User provided reference genes

Program Settings