Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-144 516.2 271 100.0
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.7e-143 512.7 271 99.3
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 9.3e-113 410.6 272 79.8
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.8e-109 399.1 270 79.3
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.8e-100 369.8 274 73.0
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.0e-98 364.0 272 72.1
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 5.5e-97 358.2 273 72.5
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 5.5e-97 358.2 270 70.7
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.1e-96 356.3 274 69.7
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 3.6e-96 355.5 272 68.8
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 6.1e-96 354.8 282 68.8
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.0e-95 354.0 281 68.7
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.3e-95 352.8 265 70.9
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 8.8e-95 350.9 271 68.3
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.9e-94 349.7 272 69.1
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.3e-94 348.6 273 67.8
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 4.3e-94 348.6 276 68.1
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.7e-93 346.7 273 69.6
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.2e-93 346.3 275 68.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.8e-93 345.9 272 70.6
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.8e-93 345.9 281 68.0
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.7e-93 345.5 273 68.9
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 4.8e-93 345.1 281 66.9
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 8.2e-93 344.4 272 66.2
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.1e-92 344.0 272 68.0
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.8e-92 343.2 274 67.9
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.4e-92 342.8 267 68.2
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 9.1e-92 340.9 274 65.7
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.5e-91 340.1 272 67.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.6e-91 339.3 273 68.5
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 3.4e-91 339.0 269 66.9
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 5.9e-91 338.2 267 66.7
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.3e-90 337.0 271 66.4
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.7e-90 336.7 279 66.3
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.7e-90 336.7 277 66.4
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.9e-90 335.9 271 64.9
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 5.0e-90 335.1 273 66.3
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 6.5e-90 334.7 271 64.9
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.1e-89 334.0 262 67.6
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.6e-88 330.1 275 64.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.6e-88 330.1 269 65.1
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.7e-88 329.3 273 64.8
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.7e-88 329.3 275 65.1
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 3.6e-88 328.9 275 64.4
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 7.9e-88 327.8 269 64.3
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.0e-87 327.4 273 64.8
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.4e-87 327.0 275 64.4
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.3e-87 326.2 276 64.1
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 5.1e-87 325.1 272 62.5
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 8.8e-87 324.3 275 64.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.1e-86 323.9 271 64.2
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.0e-86 323.2 273 63.0
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.3e-86 322.4 273 62.3
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 4.4e-86 322.0 277 61.4
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.7e-86 321.6 303 59.1
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 7.4e-86 321.2 273 64.5
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.2e-85 319.7 274 62.0
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 3.7e-85 318.9 270 64.1
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 3.7e-85 318.9 272 63.2
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 3.7e-85 318.9 272 62.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.7e-85 318.9 264 63.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.4e-84 317.0 269 62.5
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.1e-84 315.8 276 61.6
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.2e-83 313.9 270 62.6
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-83 313.5 288 60.1
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 4.5e-83 312.0 274 63.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.0e-82 310.8 263 63.9
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.0e-82 310.8 271 60.5
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-82 310.1 287 59.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 2.9e-82 309.3 271 60.9
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 3.8e-82 308.9 274 62.4
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 3.8e-82 308.9 277 61.0
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.1e-81 307.4 274 61.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.4e-81 307.0 277 60.6
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.5e-81 305.1 278 61.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.1e-80 303.1 278 61.2
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 4.7e-80 302.0 288 59.4
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 6.1e-80 301.6 267 59.9
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.1e-80 301.6 278 60.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.0e-79 300.8 258 64.7
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.0e-79 300.8 271 62.7
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.7e-79 298.1 278 60.4
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.1e-78 297.4 338 50.9
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 3.3e-78 295.8 277 55.6
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 5.7e-78 295.0 254 64.6
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.7e-77 293.5 264 61.4
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.0e-75 286.6 261 59.0
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.2e-74 283.1 221 67.9
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.2e-74 283.1 247 62.3
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.9e-73 280.0 278 54.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 5.5e-73 278.5 249 60.2
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.7e-72 276.2 192 76.0
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 3.8e-66 255.8 271 53.1
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.5e-65 251.9 269 52.8
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 9.4e-65 251.1 260 53.8
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 4.4e-62 242.3 246 56.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 7.5e-62 241.5 183 68.3
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 2.2e-61 240.0 247 56.7
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.8e-55 220.3 265 44.9
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 4.1e-52 209.1 195 57.9
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.0e-51 206.8 277 42.2
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.5e-49 200.7 149 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 9.5e-49 198.0 259 42.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 5.2e-47 192.2 212 52.8
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.4e-44 183.3 231 44.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-40 169.9 345 37.1
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.4e-36 156.8 108 75.9
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.4e-36 155.6 132 59.8
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.0e-35 152.1 115 71.3
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-34 151.0 115 70.4
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.7e-29 134.0 134 55.2
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 4.9e-29 132.5 84 77.4
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 2.4e-28 130.2 94 69.1
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 7.8e-27 125.2 100 67.0
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.0e-26 124.8 109 64.2
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.5e-25 120.2 104 62.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 3.3e-25 119.8 111 61.3
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 7.3e-25 118.6 94 63.8
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 9.5e-25 118.2 275 32.4
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.2e-24 117.9 96 65.6
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-23 114.4 111 56.8
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.4e-23 113.6 250 30.8
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.3e-21 107.8 74 74.3
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.2e-19 101.3 70 67.1
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 3.5e-19 99.8 152 42.8
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.0e-19 99.0 56 80.4
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.7e-18 97.4 74 70.3
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 8.7e-18 95.1 124 48.4
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 4.7e-16 89.4 58 79.3
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.4e-15 87.8 103 52.4
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 3.1e-15 86.7 69 60.9
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.0e-15 85.1 74 60.8
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.0e-10 71.6 98 44.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.9e-09 67.4 82 50.0
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.4e-07 60.5 68 50.0


User provided reference genes

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