Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1935.6 987 100.0
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1903.3 987 98.5
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1495.3 992 77.3
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1434.5 990 73.2
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1428.3 1000 73.9
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1426.4 967 74.9
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1412.5 987 73.7
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1404.0 992 72.5
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1401.3 995 72.7
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1397.5 986 72.8
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1395.9 994 72.4
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1395.6 992 71.7
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1394.8 992 72.8
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1394.0 993 72.2
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1386.3 991 71.4
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1382.9 990 71.3
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1382.1 985 71.2
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1380.9 991 71.2
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1379.0 986 71.4
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1377.5 991 71.1
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1370.9 984 71.1
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1370.9 987 71.1
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1368.6 990 70.1
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1368.6 981 71.3
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1367.8 989 70.8
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1366.7 988 71.4
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1363.2 1004 70.8
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1362.8 978 71.1
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1358.2 985 71.0
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1356.7 990 70.2
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1355.5 991 70.1
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1354.7 972 71.6
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1353.6 989 70.6
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1352.8 993 69.7
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1350.5 978 70.7
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1349.7 972 71.5
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1349.7 968 72.0
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1349.0 995 69.4
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1348.6 979 70.4
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1348.6 977 70.6
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1347.8 987 69.8
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1347.8 987 69.8
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1345.1 994 69.9
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1343.9 985 69.1
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1343.6 982 70.3
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1343.2 981 69.8
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1342.8 966 72.6
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1342.4 981 69.8
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1341.3 991 69.4
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1340.5 986 70.4
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1339.3 993 69.1
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1338.9 984 69.0
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1338.2 956 71.0
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1338.2 987 69.6
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1337.8 982 69.6
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1337.0 984 69.1
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1335.5 977 70.3
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1331.6 1023 67.6
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1331.2 984 68.5
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1327.0 1017 68.3
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1326.6 981 69.7
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1324.3 982 68.2
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1323.1 909 73.8
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1317.0 1031 67.3
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1308.5 997 68.9
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1308.5 996 69.1
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1301.2 991 67.7
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1286.2 934 70.4
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1271.5 971 67.1
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1260.0 984 67.0
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1251.9 1000 65.9
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1209.5 981 65.0
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1204.5 935 67.2
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1204.5 981 64.9
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1203.0 1035 61.4
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1182.5 1011 62.4
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1179.1 990 63.7
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1176.0 900 68.7
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1146.0 886 65.6
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1116.7 863 65.8
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1098.2 952 61.9
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 0.0e+00 1098.2 803 70.9
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 0.0e+00 1079.7 958 57.6
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 7.9e-303 1043.9 970 55.8
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.5e-301 1039.6 749 68.2
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 8.2e-292 1007.3 968 56.1
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 2.0e-274 949.5 718 66.2
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.2e-268 929.5 968 51.7
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 4.8e-268 928.3 711 66.0
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.3e-254 882.9 661 69.3
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 1.7e-249 866.7 702 65.2
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.8e-246 856.7 682 66.3
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 7.8e-242 841.3 579 69.9
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 2.4e-235 819.7 975 49.1
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 8.6e-233 811.2 695 62.2
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 5.8e-213 745.3 483 75.4
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.4e-211 740.0 769 52.8
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 2.1e-210 736.9 619 65.3
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 4.8e-199 699.1 643 58.0
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.5e-192 677.6 566 65.5
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 2.4e-182 643.7 395 76.7
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.6e-157 560.5 977 37.4
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.4e-153 548.1 340 77.1
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.7e-143 514.6 404 65.1
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 2.3e-140 504.2 298 79.5
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 8.3e-127 459.1 983 33.5
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 2.9e-119 434.1 308 67.2
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.2e-117 428.7 416 56.2
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 9.6e-75 286.2 222 67.1
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 5.8e-72 276.9 232 66.8
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 2.9e-55 221.5 143 82.5
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 6.1e-53 213.8 154 68.2
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 6.7e-52 210.3 136 81.6
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 2.6e-51 208.4 109 85.3
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 4.8e-34 151.0 113 73.5
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 9.2e-25 120.2 137 55.5
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.0e-23 116.7 69 84.1
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.6e-22 110.9 69 81.2
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.6e-22 110.9 69 81.2
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-21 109.8 69 81.2
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-21 109.8 69 81.2
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-21 109.8 69 81.2
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.8e-21 108.6 69 79.7
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 6.1e-21 107.5 69 79.7
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.8e-20 105.9 69 79.7
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.3e-20 105.5 69 79.7
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.6e-19 102.1 82 70.7
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 2.6e-19 102.1 82 70.7
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 1.7e-18 99.4 70 67.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 2.2e-18 99.0 81 66.7
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 4.9e-18 97.8 84 66.7
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 6.4e-18 97.4 63 79.4
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 3.2e-17 95.1 80 63.8
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.2e-16 93.2 82 65.9
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.5e-14 86.3 74 56.8
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 4.0e-12 78.2 351 23.9
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 1.2e-11 76.6 346 24.3
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 9.8e-11 73.6 346 21.4
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 2.9e-10 72.0 345 24.3
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 6.4e-10 70.9 349 22.1
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 1.1e-09 70.1 358 24.9
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 1.4e-09 69.7 337 26.1
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 3.2e-09 68.6 339 24.5
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 5.4e-09 67.8 351 24.2
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 7.0e-09 67.4 357 23.5
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 7.0e-09 67.4 369 23.0
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 9.2e-09 67.0 352 24.7
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 1.2e-08 66.6 376 24.2
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 1.2e-08 66.6 181 27.1
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.6e-08 66.2 378 24.1
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.0e-08 65.9 348 23.9
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 2.0e-08 65.9 378 23.8
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 2.7e-08 65.5 316 24.4
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 2.7e-08 65.5 351 22.5
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 3.5e-08 65.1 348 23.3
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 3.5e-08 65.1 348 23.3
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 6.0e-08 64.3 348 23.0
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 6.0e-08 64.3 348 23.3
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 7.8e-08 63.9 378 23.8
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 7.8e-08 63.9 353 21.5
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 1.3e-07 63.2 36 88.9
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.3e-07 62.4 348 23.0
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 2.3e-07 62.4 71 49.3
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 3.0e-07 62.0 375 23.7
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 3.0e-07 62.0 40 85.0
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 3.0e-07 62.0 71 49.3
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 3.0e-07 62.0 40 85.0
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 3.9e-07 61.6 356 23.3
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 5.0e-07 61.2 343 22.4
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 8.6e-07 60.5 538 21.2
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 8.6e-07 60.5 342 22.8
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 1.5e-06 59.7 352 23.9
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 1.5e-06 59.7 420 22.4
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 1.9e-06 59.3 322 24.8
Dinv01622 Davidia involucrata HOM05D006593 ORTHO05D008512 1.9e-06 59.3 348 24.7
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 3.3e-06 58.5 420 21.7
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 4.3e-06 58.2 371 22.9
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 5.6e-06 57.8 170 27.1


User provided reference genes

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