Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 0.0e+00 1140.6 663 100.0
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 0.0e+00 1078.2 665 95.8
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 3.1e-154 549.7 734 55.2
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 4.1e-154 549.3 677 57.3
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 1.5e-151 540.8 727 54.1
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 1.7e-136 490.7 706 53.3
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 8.9e-133 478.4 692 53.3
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 1.2e-132 478.0 692 53.2
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 2.0e-132 477.2 713 52.9
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 5.8e-132 475.7 715 53.8
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 3.7e-131 473.0 729 51.2
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 2.4e-130 470.3 728 50.8
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 8.6e-128 461.8 715 51.6
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 1.5e-127 461.1 723 50.5
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.5e-127 461.1 707 50.2
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 4.3e-127 459.5 707 51.5
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 5.6e-127 459.1 689 48.8
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 6.2e-126 455.7 707 50.9
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 4.0e-125 453.0 728 48.4
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 6.8e-125 452.2 704 51.6
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 7.5e-124 448.7 713 50.1
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 6.4e-123 445.7 684 50.3
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 8.3e-123 445.3 672 52.4
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 4.1e-122 443.0 706 49.6
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 4.1e-122 443.0 706 50.3
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 7.1e-122 442.2 779 47.6
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 7.1e-122 442.2 697 50.8
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.6e-121 441.0 700 50.0
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 3.5e-121 439.9 721 48.0
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 4.6e-121 439.5 701 49.4
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 6.0e-121 439.1 717 49.1
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 7.8e-121 438.7 679 49.8
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.0e-120 438.3 716 50.7
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 3.0e-120 436.8 711 50.2
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.1e-120 436.0 726 47.8
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 2.5e-119 433.7 704 50.3
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 3.3e-119 433.3 717 51.2
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 5.6e-119 432.6 690 49.6
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 3.6e-118 429.9 717 48.0
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 4.7e-118 429.5 728 47.8
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 6.2e-118 429.1 700 48.0
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.1e-117 428.3 700 48.7
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.8e-117 427.6 698 48.1
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 6.8e-117 425.6 722 47.4
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 6.8e-117 425.6 746 48.5
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.9e-117 425.2 712 48.3
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 8.9e-117 425.2 692 49.3
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 2.0e-116 424.1 723 48.1
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 2.6e-116 423.7 704 46.6
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 3.4e-116 423.3 698 47.6
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 7.6e-116 422.2 713 47.1
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 1.7e-115 421.0 705 49.4
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 1.7e-115 421.0 707 50.9
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 4.9e-115 419.5 712 48.6
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 3.2e-114 416.8 698 46.7
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 9.2e-114 415.2 699 44.8
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.1e-113 414.1 697 47.2
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 2.1e-113 414.1 683 47.0
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 2.7e-113 413.7 729 48.8
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 4.6e-113 412.9 695 48.5
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 7.8e-113 412.1 702 47.7
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.0e-112 411.8 726 48.8
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 1.3e-112 411.4 683 51.1
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 2.3e-112 410.6 690 49.0
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 2.3e-112 410.6 691 49.2
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 5.1e-112 409.5 689 48.9
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 1.1e-111 408.3 705 49.4
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 1.1e-111 408.3 700 48.3
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 7.3e-111 405.6 690 49.4
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 1.6e-110 404.4 692 48.6
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 3.6e-110 403.3 680 50.1
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 3.6e-110 403.3 742 47.8
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 3.1e-109 400.2 692 47.7
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 5.8e-108 396.0 700 49.7
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 9.9e-108 395.2 687 47.9
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 8.4e-107 392.1 687 47.0
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 1.2e-105 388.3 696 45.8
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 2.1e-105 387.5 675 47.1
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 2.3e-104 384.0 678 49.6
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 1.9e-103 380.9 388 60.3
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 3.3e-103 380.2 669 47.7
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 4.3e-103 379.8 705 43.7
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 7.3e-103 379.0 677 48.2
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 1.6e-102 377.9 674 47.2
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 2.1e-102 377.5 695 46.9
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 1.4e-101 374.8 673 47.8
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 2.4e-101 374.0 704 45.0
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 9.0e-101 372.1 674 42.6
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 5.8e-100 369.4 702 44.4
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 7.6e-100 369.0 708 43.5
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 3.8e-99 366.7 659 48.4
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 5.4e-98 362.8 577 51.5
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 4.3e-95 353.2 877 40.1
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 6.2e-94 349.4 357 59.1
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 1.4e-93 348.2 351 59.8
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 3.5e-89 333.6 300 64.3
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 8.7e-88 328.9 675 40.1
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 1.1e-87 328.6 589 48.6
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 6.2e-86 322.8 674 42.4
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 3.5e-81 307.0 335 55.8
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 7.9e-81 305.8 573 45.9
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 1.1e-79 302.0 340 54.1
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 9.4e-74 282.3 311 52.1
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 7.4e-71 272.7 300 53.3
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.8e-67 260.4 464 50.6
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 1.4e-64 251.9 308 52.9
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 7.0e-61 239.6 228 62.3
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 3.3e-55 220.7 255 53.3
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 2.4e-53 214.5 303 46.2
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.6e-52 211.8 240 55.8
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.6e-49 201.8 510 43.7
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 4.8e-46 190.3 447 44.5
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 2.0e-44 184.9 299 45.8
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 4.2e-42 177.2 338 38.8
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.4e-40 172.2 174 59.2
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 8.8e-40 169.5 174 58.6
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 2.8e-38 164.5 350 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 4.9e-30 137.1 740 29.6
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 2.4e-29 134.8 240 39.2
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 4.1e-29 134.0 145 51.0
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 3.8e-27 127.5 197 43.1
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 5.6e-26 123.6 127 48.0
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 5.6e-26 123.6 127 48.0
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 5.6e-26 123.6 127 48.0
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 5.6e-26 123.6 127 48.0
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 3.6e-25 120.9 302 35.8
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 5.2e-24 117.1 395 37.5
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 1.4e-21 109.0 119 44.5
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 1.6e-20 105.5 402 33.8
Actinidia04720 Actinidia chinensis HOM05D004897 ORTHO05D005928 2.7e-20 104.8 402 37.8
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 3.5e-20 104.4 84 70.2
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 4.3e-18 97.4 105 49.5
BcaC05g25715 Brassica carinata HOM05D004897 ORTHO05D005928 4.1e-13 80.9 292 34.6
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 1.2e-09 69.3 82 56.1
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 1.6e-09 68.9 547 26.7
TWI36G1671 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.6e-09 68.9 47 85.1
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 2.1e-09 68.6 63 57.1
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 1.8e-08 65.5 122 45.1
Prupe.5G050900 Prunus persica HOM05D004897 ORTHO05D005928 4.0e-08 64.3 43 76.7
Peaxi162Scf00683g00456 Petunia axillaris HOM05D004897 ORTHO05D005928 1.2e-07 62.8 121 40.5
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 5.8e-07 60.5 98 46.9
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.7e-06 58.9 323 25.1
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.4e-06 57.0 346 23.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 8.3e-06 56.6 333 23.7
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.3e-06 56.6 308 23.4


User provided reference genes

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