Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.5e-217 759.2 383 100.0
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.2e-207 724.9 383 94.5
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.9e-148 529.6 372 72.3
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 5.0e-144 515.0 365 73.7
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 6.5e-144 514.6 357 73.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.3e-141 506.1 380 70.5
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 5.1e-141 505.0 348 73.3
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 3.7e-139 498.8 370 68.6
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 4.1e-138 495.4 381 67.5
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 5.3e-138 495.0 370 70.0
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.0e-137 493.0 305 79.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 4.5e-137 491.9 371 68.7
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 5.9e-137 491.5 379 68.3
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 5.9e-137 491.5 374 68.2
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 5.9e-137 491.5 382 67.0
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 2.2e-136 489.6 367 69.8
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 5.0e-136 488.4 368 68.8
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.6e-134 483.4 347 72.0
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.6e-134 482.3 320 75.9
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 6.1e-134 481.5 353 70.5
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.0e-133 480.7 328 73.2
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.0e-133 480.7 392 66.1
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.1e-133 478.4 352 69.6
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.1e-132 477.2 347 71.8
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.5e-132 476.9 352 69.3
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.5e-132 476.9 320 75.3
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.5e-132 476.1 333 72.7
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 3.3e-132 475.7 382 66.2
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 9.7e-132 474.2 378 64.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 9.7e-132 474.2 374 66.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.3e-131 473.8 305 76.4
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 6.3e-131 471.5 331 71.0
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.1e-130 470.7 330 69.1
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 5.3e-130 468.4 329 71.4
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 6.9e-130 468.0 339 69.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.5e-129 466.8 389 63.5
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.5e-129 466.8 361 66.8
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-129 466.8 305 74.4
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 5.9e-129 464.9 361 65.4
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 7.7e-129 464.5 364 65.4
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-128 463.8 359 66.9
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.3e-128 463.8 368 64.9
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 2.2e-128 463.0 376 65.2
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.8e-128 462.2 336 71.1
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 3.8e-128 462.2 373 64.3
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 3.8e-128 462.2 377 64.5
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 8.5e-128 461.1 366 65.0
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.4e-127 460.3 358 67.9
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.5e-127 459.5 304 73.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.5e-127 459.5 374 63.6
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.5e-127 459.5 330 70.6
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.2e-126 457.2 292 76.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.1e-126 456.4 378 63.2
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.1e-126 456.4 305 73.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.6e-126 455.7 378 63.2
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 4.7e-126 455.3 368 63.6
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 7.9e-126 454.5 350 67.7
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 2.3e-125 453.0 326 67.2
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.0e-125 452.6 378 63.2
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.5e-124 450.3 304 74.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.6e-124 449.5 341 68.0
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 2.6e-124 449.5 378 63.5
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.4e-124 448.7 369 61.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 5.7e-124 448.4 372 63.4
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.3e-123 447.2 330 68.8
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 4.8e-123 445.3 331 68.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 6.3e-123 444.9 370 63.2
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.1e-122 444.1 325 69.2
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.8e-122 443.4 362 63.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 2.4e-122 443.0 372 62.6
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 5.3e-122 441.8 365 63.6
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 9.1e-122 441.0 311 70.1
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.2e-121 440.7 311 70.4
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-121 440.3 330 67.0
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-121 439.9 311 69.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-121 439.9 311 69.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 5.9e-121 438.3 349 65.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.0e-120 437.6 329 66.0
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.0e-120 437.6 302 70.5
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.8e-120 435.6 376 60.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 5.0e-120 435.3 377 63.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.9e-119 433.3 313 67.1
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.5e-119 433.0 321 66.7
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 7.2e-119 431.4 376 63.6
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 4.7e-118 428.7 312 68.3
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.0e-117 427.6 335 64.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.4e-117 427.2 377 62.1
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.3e-116 422.5 424 55.4
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 8.5e-112 407.9 385 57.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 4.2e-111 405.6 377 59.9
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.5e-108 397.1 279 68.5
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.5e-108 397.1 279 68.5
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 6.3e-107 391.7 283 67.8
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.4e-106 388.7 253 73.5
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.0e-104 384.4 380 57.4
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 5.7e-100 368.6 294 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.7e-99 367.1 285 63.5
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 5.4e-98 362.1 310 58.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 6.1e-94 348.6 293 63.1
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 6.8e-93 345.1 270 65.9
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.5e-92 341.7 307 53.4
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 3.7e-91 339.3 300 55.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 4.1e-90 335.9 295 54.6
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-89 334.3 306 54.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-89 334.3 300 54.3
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.0e-89 333.6 294 58.8
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.5e-89 332.8 306 53.3
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.3e-88 330.1 346 49.4
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 3.9e-88 329.3 302 53.6
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 6.6e-88 328.6 306 53.6
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 6.6e-88 328.6 301 53.8
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.6e-88 328.6 283 62.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.5e-87 327.4 304 54.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 2.5e-87 326.6 302 53.3
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 4.3e-87 325.9 301 53.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-87 325.5 294 54.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-87 325.5 296 53.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.7e-86 322.4 302 54.3
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.0e-85 321.2 302 54.6
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.2e-85 318.9 303 51.8
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.2e-85 318.9 305 52.1
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.8e-85 318.5 305 52.8
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-84 317.8 304 51.6
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.6e-84 316.6 302 52.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.6e-84 316.6 302 52.3
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 4.4e-84 315.8 313 51.1
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.8e-84 315.5 308 52.6
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-83 314.3 308 51.9
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-83 313.5 307 51.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.9e-83 313.2 223 67.3
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 4.9e-83 312.4 308 52.9
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 6.4e-83 312.0 313 50.2
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 6.4e-83 312.0 308 52.6
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-82 310.5 276 54.7
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.9e-82 310.5 308 49.0
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.9e-82 310.5 303 52.5
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-81 307.8 308 51.0
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-81 307.8 307 51.1
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.0e-81 307.0 302 50.0
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.5e-79 300.1 307 49.5
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-77 293.5 280 52.5
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.4e-76 289.7 229 67.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.4e-76 289.3 287 49.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-71 272.3 308 48.4
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-70 270.0 294 48.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-69 267.3 287 49.1
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-69 266.5 350 42.6
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 3.5e-65 253.1 248 50.4
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.7e-62 242.7 296 47.3
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-56 224.9 222 52.3
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.3e-56 223.8 287 41.8
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-54 216.5 198 54.0
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-54 216.5 198 54.0
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 3.8e-51 206.5 191 57.1
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.4e-50 203.8 193 57.5
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 3.5e-49 199.9 329 36.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 4.8e-38 162.9 152 53.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.4e-37 160.6 128 54.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-35 155.2 309 33.3
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-35 154.5 128 53.1
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.7e-35 154.5 128 53.1
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 8.2e-30 135.6 163 47.9
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.9e-29 132.5 82 78.0
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-28 131.7 108 50.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.7e-22 110.2 94 61.7
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 3.4e-20 103.6 302 28.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.8e-14 83.2 78 57.7


User provided reference genes

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