Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-137 491.9 241 100.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.5e-133 479.6 241 96.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 4.9e-105 384.8 251 76.1
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.1e-104 383.6 247 75.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 9.2e-104 380.6 252 72.6
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.7e-103 379.0 249 74.7
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.5e-103 378.6 251 73.3
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 4.6e-103 378.3 250 74.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 4.6e-103 378.3 249 72.7
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 5.9e-103 377.9 251 76.1
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 7.8e-103 377.5 250 73.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.0e-102 377.1 249 74.7
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.0e-102 377.1 250 74.8
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.0e-102 377.1 251 73.7
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-102 376.7 251 75.7
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 3.0e-102 375.6 252 71.4
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 3.9e-102 375.2 252 71.4
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 6.6e-102 374.4 252 70.6
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 8.6e-102 374.0 249 72.3
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.6e-102 374.0 252 73.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.5e-101 373.2 250 73.6
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.9e-101 372.9 251 72.9
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.5e-101 372.5 251 72.9
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 7.3e-101 370.9 251 73.7
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 9.5e-101 370.5 251 72.5
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.2e-100 370.2 251 72.9
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.1e-100 369.4 250 74.0
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 6.2e-100 367.9 250 72.8
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 8.0e-100 367.5 251 72.5
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 8.0e-100 367.5 251 72.5
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.0e-99 367.1 250 72.8
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.0e-99 367.1 246 72.4
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.4e-99 366.7 251 71.7
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.3e-99 365.9 251 71.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 2.3e-99 365.9 252 69.4
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.1e-99 365.5 252 70.6
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.0e-99 365.2 250 71.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.0e-99 365.2 249 73.5
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 4.0e-99 365.2 252 69.8
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 4.0e-99 365.2 249 73.5
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 6.8e-99 364.4 246 71.5
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 6.8e-99 364.4 246 71.5
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 8.9e-99 364.0 250 71.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.9e-99 364.0 246 71.5
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-98 363.6 246 71.5
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-98 363.6 246 71.5
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.2e-98 363.6 249 73.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-98 363.2 246 71.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.0e-98 362.8 250 70.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.0e-98 362.8 249 71.1
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.6e-98 362.5 249 73.5
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.6e-98 362.5 249 73.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.6e-98 362.5 250 72.8
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.6e-98 362.5 250 70.0
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.4e-98 362.1 250 69.6
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.4e-98 362.1 250 72.8
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 5.8e-98 361.3 251 70.5
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.8e-98 361.3 249 73.1
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 7.5e-98 360.9 246 71.5
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 7.5e-98 360.9 252 72.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.5e-98 360.9 252 69.4
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 9.8e-98 360.5 246 71.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 9.8e-98 360.5 251 70.1
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.3e-97 360.1 251 69.3
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.7e-97 359.8 251 69.3
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.7e-97 359.8 252 69.4
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.2e-97 359.4 250 71.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.2e-97 359.4 250 71.6
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.2e-97 359.4 251 68.9
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.7e-97 358.6 239 71.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.7e-97 358.6 246 70.7
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 3.7e-97 358.6 250 68.8
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 4.9e-97 358.2 252 69.4
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.9e-97 358.2 250 69.2
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 4.9e-97 358.2 251 68.5
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 8.3e-97 357.5 252 69.8
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 8.3e-97 357.5 246 70.3
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.1e-96 357.1 250 71.2
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.1e-96 357.1 246 68.7
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.1e-96 357.1 250 71.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.4e-96 356.7 261 68.2
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.4e-96 356.7 250 72.8
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.4e-96 355.9 252 69.8
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.4e-96 355.9 251 68.1
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 5.4e-96 354.8 249 70.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.7e-95 352.4 253 69.2
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 4.6e-95 351.7 251 68.5
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.0e-94 350.5 252 67.9
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.3e-94 350.1 251 67.3
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.3e-94 349.4 253 68.4
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.0e-94 349.0 247 69.2
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.0e-94 348.2 251 68.9
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 6.6e-94 347.8 250 68.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.2e-92 343.6 251 65.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.2e-92 343.6 253 66.0
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.8e-92 342.4 243 69.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 3.6e-92 342.0 251 67.7
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.8e-91 339.7 272 62.9
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.8e-91 339.7 272 62.9
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 8.9e-91 337.4 241 71.0
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-90 337.0 242 68.6
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-90 337.0 242 68.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.6e-90 335.9 250 66.0
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 3.4e-90 335.5 251 66.5
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 5.8e-90 334.7 242 67.4
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.5e-90 334.3 295 60.7
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 9.8e-90 334.0 251 66.5
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.2e-89 332.8 240 69.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.9e-89 332.4 254 62.6
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.9e-89 332.4 236 67.8
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.7e-89 332.0 236 67.8
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 4.9e-89 331.6 253 66.4
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.9e-88 329.7 225 73.8
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.4e-88 329.3 240 66.7
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.6e-87 326.6 257 63.0
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.7e-87 325.9 288 58.7
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.7e-87 325.9 249 63.5
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.9e-86 322.0 254 64.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 7.3e-85 317.8 240 64.2
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 3.6e-84 315.5 179 83.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 8.9e-83 310.8 248 62.5
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 7.6e-82 307.8 257 60.7
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 9.9e-82 307.4 202 72.8
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 9.9e-82 307.4 251 61.8
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.1e-80 303.9 251 61.0
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.2e-79 300.4 174 82.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.7e-78 296.6 245 64.9
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.1e-75 285.8 175 77.1
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 6.8e-75 284.6 241 62.2
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-74 283.5 251 61.0
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.8e-71 271.2 153 84.3
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.5e-66 256.9 225 53.8
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 6.4e-65 251.5 151 79.5
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.4e-64 250.4 147 81.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 7.9e-63 244.6 186 66.1
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.0e-62 242.7 182 68.1
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.4e-59 233.8 182 58.8
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 2.1e-52 209.9 175 58.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 3.5e-47 192.6 190 55.3
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 3.5e-47 192.6 190 55.3
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.0e-46 189.5 190 53.2
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.9e-45 186.8 110 81.8
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 7.6e-42 174.9 158 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.9e-37 160.2 133 55.6
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.1e-35 152.9 88 84.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 9.7e-29 131.3 103 63.1
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 8.2e-28 128.3 75 82.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.5e-24 116.7 174 36.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 2.5e-24 116.7 63 82.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 6.1e-23 112.1 84 69.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 3.0e-22 109.8 99 58.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 3.0e-22 109.8 99 58.6
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.6e-21 106.7 168 35.7
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.7e-20 102.8 108 56.5
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 4.0e-14 82.8 83 59.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.4e-13 79.3 94 53.2
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-11 74.7 52 69.2
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-09 67.4 54 66.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 6.5e-09 65.5 174 28.7
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 5.5e-08 62.4 47 61.7
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 9.4e-08 61.6 52 61.5
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 9.4e-08 61.6 46 56.5
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 4.7e-07 59.3 165 28.5
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 8.8e-06 55.1 34 70.6


User provided reference genes

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