Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.2e-117 425.6 214 100.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.3e-64 250.4 229 61.1
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 9.1e-63 244.2 228 59.2
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 4.5e-62 241.9 228 59.2
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.0e-61 240.7 229 58.5
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.0e-61 240.7 231 58.4
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.3e-61 240.4 229 59.8
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 5.0e-61 238.4 233 57.1
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 6.5e-61 238.0 223 60.1
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 6.5e-61 238.0 229 58.5
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.9e-60 236.5 227 59.0
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.5e-60 236.1 227 58.6
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 4.2e-60 235.3 232 57.3
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 7.2e-60 234.6 231 58.0
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 9.4e-60 234.2 229 55.9
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.2e-59 233.8 227 56.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.6e-59 233.4 229 57.2
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.6e-59 233.4 229 59.0
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.6e-59 233.4 210 60.5
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.1e-59 233.0 229 57.2
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.1e-59 233.0 229 55.9
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-59 233.0 206 61.7
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 2.7e-59 232.6 227 58.6
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 2.7e-59 232.6 225 59.1
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 3.6e-59 232.3 228 57.0
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.7e-59 231.9 227 57.7
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.0e-59 231.1 227 58.1
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.0e-58 230.7 229 55.5
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.8e-58 229.9 230 56.1
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.8e-58 229.9 229 55.0
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.3e-58 229.6 228 56.6
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 4.0e-58 228.8 229 55.0
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.2e-57 227.3 231 57.1
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.0e-57 226.5 230 56.1
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.4e-57 225.7 161 70.8
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.4e-57 225.3 230 56.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.4e-57 225.3 230 56.1
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 4.4e-57 225.3 231 57.1
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 4.4e-57 225.3 160 70.6
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 5.7e-57 224.9 229 54.6
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.7e-57 224.9 229 55.5
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 7.5e-57 224.6 234 55.1
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 9.8e-57 224.2 234 55.1
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 1.7e-56 223.4 158 70.3
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.2e-56 223.0 230 55.2
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 2.2e-56 223.0 229 53.7
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 2.2e-56 223.0 225 56.0
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.2e-56 223.0 156 71.2
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 3.7e-56 222.2 233 55.4
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.8e-56 221.9 161 68.9
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 6.3e-56 221.5 230 55.2
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.1e-55 220.7 231 55.4
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.4e-55 220.3 234 53.8
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.4e-55 220.3 227 56.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.8e-55 219.9 236 56.4
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.4e-55 219.5 208 58.2
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 4.1e-55 218.8 161 68.9
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 4.1e-55 218.8 161 68.3
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 4.1e-55 218.8 216 57.4
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 4.1e-55 218.8 211 58.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 7.0e-55 218.0 162 68.5
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 9.1e-55 217.6 232 55.6
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-54 217.2 224 55.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.0e-54 216.5 197 58.4
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.0e-54 216.5 233 53.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.0e-54 216.5 225 55.6
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 2.7e-54 216.1 172 65.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 3.5e-54 215.7 226 55.3
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 3.5e-54 215.7 230 54.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.5e-54 215.3 164 67.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 4.5e-54 215.3 209 56.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 7.7e-54 214.5 162 67.9
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 7.7e-54 214.5 194 59.8
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 7.7e-54 214.5 235 54.0
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.0e-53 214.2 228 53.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.0e-53 214.2 217 57.1
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.0e-53 214.2 165 64.2
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.3e-53 213.8 157 70.1
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.3e-53 213.8 207 56.0
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.3e-53 213.8 230 54.3
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.7e-53 213.4 226 54.9
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 2.2e-53 213.0 168 65.5
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.2e-53 213.0 213 56.3
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.9e-53 212.6 159 67.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.9e-53 212.6 231 55.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.9e-53 212.6 163 65.6
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.0e-53 211.8 201 57.7
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 5.0e-53 211.8 162 63.0
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.5e-53 211.5 163 64.4
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 8.5e-53 211.1 180 60.0
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 8.5e-53 211.1 223 53.4
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.1e-52 210.7 164 64.6
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.2e-52 209.1 228 52.2
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 5.5e-52 208.4 172 64.5
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.2e-52 208.0 204 56.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 9.4e-52 207.6 200 57.0
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.2e-51 207.2 165 62.4
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.2e-51 207.2 217 52.5
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.1e-51 206.5 226 53.1
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.6e-51 205.7 205 56.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 4.7e-51 205.3 209 55.5
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.0e-50 204.1 231 51.1
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.4e-50 203.8 226 51.3
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 3.0e-50 202.6 231 51.9
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 3.0e-50 202.6 217 53.5
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 5.2e-50 201.8 218 53.2
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 8.8e-50 201.1 183 57.4
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.5e-49 200.3 225 51.6
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.5e-49 200.3 225 51.6
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.6e-49 199.5 178 59.0
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.4e-49 199.1 161 64.0
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 4.4e-49 198.7 163 62.0
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 9.8e-49 197.6 227 51.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.3e-48 197.2 164 62.8
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.7e-48 196.8 228 50.4
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 3.7e-48 195.7 223 51.6
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 4.9e-48 195.3 164 64.6
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.9e-48 195.3 136 71.3
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.1e-47 194.1 225 52.4
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 5.4e-47 191.8 229 50.2
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 5.4e-47 191.8 229 50.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.7e-46 189.5 178 60.1
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 4.5e-46 188.7 145 66.9
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 5.9e-46 188.3 171 59.6
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 5.0e-45 185.3 185 53.5
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 2.8e-43 179.5 189 55.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.6e-43 179.1 148 64.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 2.3e-42 176.4 148 63.5
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.9e-40 169.5 230 48.3
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.9e-40 169.5 230 48.3
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.4e-39 165.2 232 44.0
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.4e-39 165.2 144 59.0
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 7.0e-39 164.9 228 46.5
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.6e-38 163.7 232 44.0
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.6e-38 162.2 144 58.3
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.0e-37 159.5 151 53.0
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.9e-37 159.1 144 56.9
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.5e-36 157.1 129 62.0
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.1e-34 149.4 99 72.7
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.2e-30 137.5 111 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 4.6e-30 135.6 160 50.6
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 6.6e-29 131.7 197 43.7
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.5e-28 130.6 103 64.1
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.3e-28 129.0 133 51.9
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.6e-28 128.6 131 53.4
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.6e-25 119.8 105 56.2
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 4.9e-24 115.5 77 75.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.3e-24 114.8 133 47.4
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.2e-19 98.6 152 44.7
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-17 94.4 73 63.0
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 2.3e-13 80.1 95 48.4
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 2.3e-13 80.1 95 48.4
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 6.6e-13 78.6 68 57.4
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.6e-13 78.6 63 58.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 8.6e-13 78.2 135 34.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.9e-12 77.0 118 36.4
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.2e-11 74.3 106 36.8


User provided reference genes

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