Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 4.6e-152 541.2 276 100.0
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.8e-146 521.5 276 96.7
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 8.3e-109 397.5 272 74.3
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 8.3e-109 397.5 272 74.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 3.5e-107 392.1 259 75.3
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.1e-104 382.9 270 69.3
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 8.0e-104 380.9 267 72.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 5.2e-103 378.3 269 71.0
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 4.9e-101 371.7 270 68.9
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 6.4e-101 371.3 270 69.6
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 1.1e-100 370.5 257 71.6
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.4e-100 370.2 270 71.9
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 2.4e-100 369.4 258 73.3
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.4e-100 369.4 246 73.6
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.2e-100 369.0 270 70.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 4.1e-100 368.6 270 69.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.1e-100 368.6 242 76.0
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 5.4e-100 368.2 270 69.6
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.2e-99 367.1 249 71.9
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.6e-99 366.7 245 73.5
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 2.7e-99 365.9 249 72.3
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 6.0e-99 364.8 270 67.4
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.3e-98 363.6 273 70.0
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 3.9e-98 362.1 249 71.5
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-98 362.1 249 71.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 3.9e-98 362.1 249 71.9
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.0e-98 361.7 249 71.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 5.0e-98 361.7 251 71.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 6.6e-98 361.3 249 71.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 6.6e-98 361.3 249 71.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 8.6e-98 360.9 252 70.6
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-97 360.5 249 71.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.5e-97 360.1 275 66.2
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.5e-97 360.1 274 66.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.5e-97 360.1 274 66.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.9e-97 359.8 272 66.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 2.5e-97 359.4 276 66.7
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 4.3e-97 358.6 272 66.9
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 4.3e-97 358.6 272 66.9
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.6e-97 358.2 271 66.1
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 9.5e-97 357.5 249 71.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.2e-96 357.1 265 66.4
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.2e-96 357.1 271 67.5
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.6e-96 356.7 248 71.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.8e-96 355.9 278 66.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.6e-96 355.5 270 67.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.1e-96 354.4 270 67.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.1e-96 354.4 249 70.3
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 8.1e-96 354.4 248 69.4
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.4e-95 353.6 276 64.1
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.4e-95 353.6 252 69.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 8.9e-95 350.9 243 71.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.0e-94 349.7 250 70.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 2.6e-94 349.4 266 68.8
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 4.4e-94 348.6 249 68.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 5.8e-94 348.2 234 72.6
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 9.9e-94 347.4 270 66.3
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 9.9e-94 347.4 273 66.7
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.9e-93 345.9 270 67.4
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 3.7e-93 345.5 249 67.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 4.9e-93 345.1 309 59.9
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 4.9e-93 345.1 270 64.8
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 6.4e-93 344.7 282 62.4
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 8.3e-93 344.4 287 61.7
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.4e-92 343.6 270 65.2
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.9e-92 343.2 256 68.8
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.1e-92 342.0 270 64.8
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.2e-91 340.5 251 68.1
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.7e-91 339.3 244 68.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.3e-90 337.0 270 64.4
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.0e-90 335.9 278 62.9
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-89 334.0 242 69.4
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.5e-89 333.6 276 64.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.5e-89 332.8 247 68.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 7.3e-89 331.3 235 68.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.6e-88 330.1 277 62.8
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.6e-88 330.1 262 64.5
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.1e-87 327.4 251 65.7
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.1e-87 327.4 249 67.1
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 4.0e-87 325.5 269 62.5
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 8.9e-87 324.3 294 61.6
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 2.0e-86 323.2 244 64.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 2.6e-86 322.8 259 64.9
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.1e-84 314.7 246 65.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 6.0e-83 311.6 244 63.9
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.0e-82 310.8 207 74.4
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 3.0e-82 309.3 250 64.0
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.7e-77 293.5 201 71.1
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.7e-75 286.2 271 57.2
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 4.6e-75 285.4 235 64.3
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 8.7e-74 281.2 249 58.6
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 6.9e-71 271.6 249 55.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 7.6e-70 268.1 249 58.6
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 7.6e-70 268.1 194 68.6
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.7e-69 266.9 270 56.7
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.8e-69 265.8 195 68.2
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.2e-68 262.3 269 54.6
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.2e-68 262.3 299 50.5
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.2e-67 260.8 299 50.5
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.1e-66 255.4 272 52.6
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.8e-64 248.8 268 53.0
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 6.2e-64 248.4 270 51.1
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.6e-62 243.0 270 51.9
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 2.6e-62 243.0 261 51.0
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.6e-62 243.0 271 51.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.2e-60 236.1 162 73.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 9.3e-60 234.6 270 50.7
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 5.1e-58 228.8 244 50.8
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.9e-55 218.4 152 72.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.9e-52 210.3 168 66.7
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.7e-51 206.5 316 45.9
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 6.7e-50 201.8 256 44.1
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 4.3e-49 199.1 219 48.9
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.1e-47 194.5 299 40.1
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.6e-46 189.9 234 47.4
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 5.7e-41 172.2 246 41.9
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.4e-36 157.5 122 67.2
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.3e-32 144.4 110 62.7
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-29 133.7 152 50.0
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-28 131.0 85 71.8
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 3.9e-26 122.9 76 78.9
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-22 109.0 131 46.6
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.5e-20 104.4 91 56.0
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 7.5e-17 92.0 81 55.6
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 2.2e-16 90.5 185 35.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 7.2e-12 75.5 39 82.1
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-11 73.9 79 53.2
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.8e-10 68.6 71 54.9
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-09 66.2 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-09 66.2 37 83.8
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-06 55.8 35 74.3


User provided reference genes

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