Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 2.1e-70 268.9 128 100.0
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 1.8e-18 96.3 66 75.8
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 1.6e-17 93.2 66 74.2
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 5.2e-13 78.2 59 66.1
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.2e-13 78.2 79 54.4
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 6.8e-13 77.8 61 63.9
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 2.0e-12 76.3 66 62.1
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.6e-12 75.9 60 63.3
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.6e-12 75.9 60 63.3
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.6e-12 75.9 60 63.3
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 2.6e-12 75.9 63 60.3
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 3.4e-12 75.5 60 63.3
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 5.7e-12 74.7 60 61.7
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 5.7e-12 74.7 62 58.1
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 5.7e-12 74.7 61 60.7
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 5.7e-12 74.7 62 59.7
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 5.7e-12 74.7 67 58.2
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 7.5e-12 74.3 38 86.8
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 7.5e-12 74.3 62 61.3
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.8e-12 73.9 38 84.2
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 9.8e-12 73.9 38 86.8
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 9.8e-12 73.9 60 63.3
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 9.8e-12 73.9 44 77.3
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 9.8e-12 73.9 87 47.1
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.3e-11 73.6 60 61.7
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 1.3e-11 73.6 61 59.0
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 1.3e-11 73.6 60 61.7
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 1.3e-11 73.6 60 60.0
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 1.3e-11 73.6 60 60.0
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.3e-11 73.6 60 61.7
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 1.3e-11 73.6 77 51.9
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.7e-11 73.2 60 60.0
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 1.7e-11 73.2 60 60.0
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.7e-11 73.2 66 60.6
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.2e-11 72.8 60 60.0
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.2e-11 72.8 60 60.0
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 2.2e-11 72.8 60 61.7
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 2.2e-11 72.8 38 84.2
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.2e-11 72.8 66 60.6
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.2e-11 72.8 66 60.6
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.2e-11 72.8 71 56.3
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 2.2e-11 72.8 60 61.7
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 2.2e-11 72.8 62 54.8
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 2.2e-11 72.8 60 61.7
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 58.3
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 58.3
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 2.8e-11 72.4 82 48.8
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 2.8e-11 72.4 61 59.0
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 70 54.3
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 61 59.0
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 2.8e-11 72.4 60 60.0
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 3.7e-11 72.0 86 47.7
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 3.7e-11 72.0 60 60.0
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 3.7e-11 72.0 60 60.0
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 3.7e-11 72.0 60 60.0
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 4.8e-11 71.6 38 84.2
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 4.8e-11 71.6 38 81.6
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 4.8e-11 71.6 38 81.6
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 4.8e-11 71.6 60 60.0
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 4.8e-11 71.6 38 81.6
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 4.8e-11 71.6 65 56.9
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 60.0
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 60.0
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 6.3e-11 71.2 61 57.4
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 60.0
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 58.3
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 60.0
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 61.7
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 6.3e-11 71.2 62 56.5
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 6.3e-11 71.2 59 59.3
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 58.3
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 58.3
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 6.3e-11 71.2 38 84.2
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 6.3e-11 71.2 70 55.7
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 6.3e-11 71.2 61 57.4
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 60.0
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 60.0
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 58.3
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 58.3
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 6.3e-11 71.2 60 58.3
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 8.3e-11 70.9 34 88.2
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 8.3e-11 70.9 60 60.0
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 8.3e-11 70.9 61 57.4
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 8.3e-11 70.9 60 58.3
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 8.3e-11 70.9 40 77.5
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 8.3e-11 70.9 60 58.3
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 8.3e-11 70.9 60 58.3
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 1.1e-10 70.5 61 59.0
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 1.1e-10 70.5 63 57.1
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-10 70.5 60 60.0
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-10 70.5 60 60.0
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-10 70.5 60 60.0
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 1.1e-10 70.5 60 60.0
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 1.1e-10 70.5 60 60.0
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 1.1e-10 70.5 58 60.3
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 1.1e-10 70.5 60 58.3
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 1.1e-10 70.5 38 81.6
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 1.1e-10 70.5 59 61.0
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 1.4e-10 70.1 62 56.5
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 1.4e-10 70.1 60 58.3
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.4e-10 70.1 60 60.0
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.4e-10 70.1 63 55.6
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 1.4e-10 70.1 60 56.7
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.4e-10 70.1 60 56.7
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.4e-10 70.1 60 58.3
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 1.4e-10 70.1 38 78.9
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 1.4e-10 70.1 38 78.9
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.4e-10 70.1 38 78.9
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 1.4e-10 70.1 38 76.3
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 1.8e-10 69.7 60 60.0
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 1.8e-10 69.7 60 60.0
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 1.8e-10 69.7 60 60.0
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.8e-10 69.7 60 58.3
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 1.8e-10 69.7 56 60.7
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 1.8e-10 69.7 60 56.7
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 1.8e-10 69.7 60 58.3
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 1.8e-10 69.7 38 78.9
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 2.4e-10 69.3 38 78.9
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 2.4e-10 69.3 60 58.3
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 58.3
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 58.3
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 58.3
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 58.3
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 58.3
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 58.3
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 3.1e-10 68.9 33 84.8
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 3.1e-10 68.9 38 78.9
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 3.1e-10 68.9 60 56.7
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 4.1e-10 68.6 57 59.6
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 4.1e-10 68.6 60 55.0
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 4.1e-10 68.6 60 55.0
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 4.1e-10 68.6 60 55.0
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 5.4e-10 68.2 60 58.3
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 7.0e-10 67.8 60 56.7
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 9.1e-10 67.4 69 50.7
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 9.1e-10 67.4 69 50.7
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 9.1e-10 67.4 56 58.9
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 9.1e-10 67.4 39 74.4
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-09 66.6 61 54.1
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 1.6e-09 66.6 38 76.3
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 1.6e-09 66.6 39 76.9
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 1.6e-09 66.6 39 76.9
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 2.0e-09 66.2 64 51.6
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 3.5e-09 65.5 60 55.0
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 3.5e-09 65.5 34 79.4
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 3.5e-09 65.5 44 65.9
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 4.5e-09 65.1 33 81.8
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 5.0e-08 61.6 60 55.0
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 5.0e-08 61.6 60 55.0
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 8.5e-08 60.8 77 45.5
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 2.5e-07 59.3 45 60.0
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 4.2e-07 58.5 43 53.5
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 1.6e-06 56.6 49 49.0
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 2.1e-06 56.2 39 61.5
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 6.1e-06 54.7 30 66.7


User provided reference genes

Program Settings