Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.2e-85 320.5 256 100.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 4.6e-61 238.8 259 83.0
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.9e-19 100.5 244 38.9
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.8e-18 96.7 244 38.5
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.6e-13 80.9 51 60.8
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.1e-13 80.5 54 50.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.7e-13 80.1 54 50.0
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.6e-13 79.7 54 50.0
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.6e-13 79.7 54 50.0
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.0e-12 78.2 54 53.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.0e-12 78.2 54 55.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.8e-12 77.4 51 58.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 6.7e-12 75.5 53 49.1
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 8.8e-12 75.1 56 50.0
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.1e-11 74.7 51 52.9
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.5e-11 74.3 97 38.1
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 1.5e-11 74.3 51 54.9
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.5e-11 74.3 49 53.1
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.0e-11 73.9 55 49.1
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.0e-11 73.9 54 53.7
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.5e-11 73.6 54 51.9
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 3.3e-11 73.2 54 51.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 3.3e-11 73.2 54 50.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 5.7e-11 72.4 48 56.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 5.7e-11 72.4 54 48.1
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 5.7e-11 72.4 54 48.1
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 5.7e-11 72.4 54 50.0
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 5.7e-11 72.4 54 46.3
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 5.7e-11 72.4 53 50.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 7.4e-11 72.0 49 53.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 9.7e-11 71.6 52 50.0
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 9.7e-11 71.6 50 50.0
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 9.7e-11 71.6 53 45.3
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 9.7e-11 71.6 54 50.0
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 9.7e-11 71.6 54 48.1
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 9.7e-11 71.6 53 47.2
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 9.7e-11 71.6 51 51.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.3e-10 71.2 53 43.4
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.3e-10 71.2 54 48.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.3e-10 71.2 48 50.0
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.3e-10 71.2 51 49.0
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.7e-10 70.9 53 50.9
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.7e-10 70.9 51 49.0
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 2.2e-10 70.5 56 46.4
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.2e-10 70.5 54 46.3
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 2.2e-10 70.5 56 46.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.2e-10 70.5 54 46.3
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 2.2e-10 70.5 56 46.4
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.2e-10 70.5 54 46.3
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.2e-10 70.5 54 46.3
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 2.2e-10 70.5 56 46.4
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.2e-10 70.5 54 46.3
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.2e-10 70.5 54 46.3
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.2e-10 70.5 48 52.1
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.2e-10 70.5 49 51.0
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 2.2e-10 70.5 51 52.9
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.2e-10 70.5 49 51.0
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.8e-10 70.1 54 44.4
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.8e-10 70.1 54 46.3
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 3.7e-10 69.7 53 43.4
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.7e-10 69.7 54 46.3
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 3.7e-10 69.7 54 48.1
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 3.7e-10 69.7 54 46.3
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 3.7e-10 69.7 51 49.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.7e-10 69.7 50 44.0
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 3.7e-10 69.7 48 47.9
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 3.7e-10 69.7 51 49.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 3.7e-10 69.7 49 51.0
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 4.8e-10 69.3 54 51.9
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 4.8e-10 69.3 53 47.2
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 4.8e-10 69.3 49 51.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 6.3e-10 68.9 54 48.1
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 6.3e-10 68.9 54 48.1
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 6.3e-10 68.9 53 43.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 6.3e-10 68.9 53 47.2
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 8.2e-10 68.6 51 47.1
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-09 68.2 54 42.6
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-09 68.2 54 42.6
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.4e-09 67.8 51 45.1
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-09 67.8 51 45.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-09 67.8 51 45.1
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-09 67.8 51 47.1
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.4e-09 67.8 51 47.1
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.4e-09 67.8 53 45.3
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.4e-09 67.8 51 47.1
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.8e-09 67.4 49 49.0
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.8e-09 67.4 54 44.4
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.4e-09 67.0 53 45.3
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 2.4e-09 67.0 51 43.1
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 2.4e-09 67.0 50 50.0
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.4e-09 67.0 54 46.3
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 3.1e-09 66.6 48 47.9
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 3.1e-09 66.6 51 45.1
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 3.1e-09 66.6 51 45.1
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 3.1e-09 66.6 51 47.1
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.1e-09 66.6 53 45.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.1e-09 66.6 53 45.3
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.1e-09 66.2 49 46.9
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 4.1e-09 66.2 51 45.1
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 4.1e-09 66.2 49 46.9
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 5.3e-09 65.9 54 44.4
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 5.3e-09 65.9 49 44.9
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 5.3e-09 65.9 55 47.3
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.3e-09 65.9 51 47.1
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.9e-09 65.5 51 45.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.9e-09 65.5 51 45.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 6.9e-09 65.5 50 42.0
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 9.1e-09 65.1 53 43.4
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 9.1e-09 65.1 53 41.5
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.2e-08 64.7 56 42.9
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.2e-08 64.7 54 44.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.2e-08 64.7 54 42.6
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.2e-08 64.7 79 41.8
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.2e-08 64.7 53 39.6
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.5e-08 64.3 51 43.1
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.0e-08 63.9 48 47.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.0e-08 63.9 50 44.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 2.0e-08 63.9 51 45.1
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 2.6e-08 63.5 54 42.6
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.6e-08 63.5 46 50.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.6e-08 63.5 82 34.1
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 2.6e-08 63.5 49 44.9
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.4e-08 63.2 48 43.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 4.5e-08 62.8 50 38.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 5.9e-08 62.4 51 43.1
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 5.9e-08 62.4 54 40.7
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 5.9e-08 62.4 48 45.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 7.7e-08 62.0 48 45.8
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.0e-07 61.6 48 45.8
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.0e-07 61.6 51 45.1
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.3e-07 61.2 51 45.1
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.7e-07 60.8 51 43.1
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.7e-07 60.8 50 44.0
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.2e-07 60.5 59 37.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 2.2e-07 60.5 57 36.8
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.2e-07 60.5 48 41.7
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.2e-07 60.5 48 50.0
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 2.9e-07 60.1 49 38.8
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 2.9e-07 60.1 59 37.3
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 3.8e-07 59.7 50 40.0
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 5.0e-07 59.3 51 39.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.9e-06 57.4 44 43.2
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.9e-06 57.4 54 40.7
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.9e-06 57.4 50 38.0
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.5e-06 57.0 54 38.9
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 2.5e-06 57.0 45 48.9
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 4.2e-06 56.2 56 37.5
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 5.5e-06 55.8 45 42.2
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.2e-06 55.5 54 37.0
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.2e-06 55.5 54 37.0
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 9.4e-06 55.1 54 38.9


User provided reference genes

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