Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO447G0275 Papaver somniferum HOM05D003288 ORTHO05D003734 3.6e-109 398.3 206 100.0
PSO210G3953 Papaver somniferum HOM05D003288 ORTHO05D003734 1.8e-39 166.8 191 53.4
PSO210G4855 Papaver somniferum HOM05D003288 ORTHO05D003734 3.4e-38 162.5 85 94.1
PSO210G3300 Papaver somniferum HOM05D003288 ORTHO05D003734 8.3e-37 157.9 191 50.8
Nn4g23260 Nelumbo nucifera HOM05D003288 ORTHO05D003734 3.4e-30 136.0 191 44.0
Peaxi162Scf00120g00813 Petunia axillaris HOM05D003288 ORTHO05D003734 7.8e-27 124.8 188 38.8
Sopen11g002220 Solanum pennellii HOM05D003288 ORTHO05D003734 1.0e-26 124.4 188 38.8
Solyc11g006310.2 Solanum lycopersicum HOM05D003288 ORTHO05D003734 1.3e-26 124.0 188 38.8
QL01p032763 Quercus lobata HOM05D003288 ORTHO05D003734 2.9e-26 122.9 188 36.7
Dinv28220 Davidia involucrata HOM05D003288 ORTHO05D003734 6.6e-26 121.7 188 38.3
MELO3C017972.2 Cucumis melo HOM05D003288 ORTHO05D003734 8.6e-26 121.3 185 39.5
TAR629G1838 Trochodendron aralioides HOM05D003288 ORTHO05D003734 8.6e-26 121.3 191 39.3
GSVIVG01030016001 Vitis vinifera HOM05D003288 ORTHO05D003734 8.6e-26 121.3 187 39.6
Eucgr.F02892 Eucalyptus grandis HOM05D003288 ORTHO05D003734 1.5e-25 120.6 187 36.9
Cfa007776 Carpinus fangiana HOM05D003288 ORTHO05D003734 1.9e-25 120.2 188 36.7
Haze_14295 Corylus avellana HOM05D003288 ORTHO05D003734 1.9e-25 120.2 188 37.8
arahy.Tifrunner.gnm1.ann1.BXR7J4 Arachis hypogaea HOM05D003288 ORTHO05D003734 3.3e-25 119.4 188 38.8
CAN.G1256.15 Capsicum annuum HOM05D003288 ORTHO05D003734 4.3e-25 119.0 179 39.7
CsaV3_4G000640 Cucumis sativus L. HOM05D003288 ORTHO05D003734 5.6e-25 118.6 185 38.4
Lsat_1_v5_gn_4_26961 Lactuca sativa HOM05D003288 ORTHO05D003734 7.3e-25 118.2 186 38.7
arahy.Tifrunner.gnm1.ann1.NZ46DJ Arachis hypogaea HOM05D003288 ORTHO05D003734 1.2e-24 117.5 188 38.3
DCAR_030537 Daucus carota HOM05D003288 ORTHO05D003734 2.1e-24 116.7 190 40.0
QL01p003767 Quercus lobata HOM05D003288 ORTHO05D003734 2.8e-24 116.3 188 35.6
Ciclev10011340m.g Citrus clementina HOM05D003288 ORTHO05D003734 4.7e-24 115.5 189 35.4
Aqoxy3G02762 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 8.0e-24 114.8 190 39.5
arahy.Tifrunner.gnm1.ann1.F6RFY9 Arachis hypogaea HOM05D003288 ORTHO05D003734 1.4e-23 114.0 186 39.8
arahy.Tifrunner.gnm1.ann1.G6QY2G Arachis hypogaea HOM05D003288 ORTHO05D003734 1.4e-23 114.0 186 39.8
Duzib268G1591 Durio zibethinus HOM05D003288 ORTHO05D003734 1.8e-23 113.6 188 37.8
HPP92_013124 Vanilla planifolia HOM05D003288 ORTHO05D003734 1.8e-23 113.6 192 38.0
COL.COLO4_06958 Corchorus olitorius HOM05D003288 ORTHO05D003734 4.0e-23 112.5 186 37.1
Migut.A00479 Erythranthe guttata HOM05D003288 ORTHO05D003734 5.2e-23 112.1 188 34.6
HanXRQChr13g0424601 Helianthus annuus HOM05D003288 ORTHO05D003734 5.2e-23 112.1 188 38.3
Lj7A364T81 Lonicera japonica HOM05D003288 ORTHO05D003734 5.2e-23 112.1 190 40.0
Sed0014607 Sechium edule HOM05D003288 ORTHO05D003734 5.2e-23 112.1 186 38.2
DCAR_004634 Daucus carota HOM05D003288 ORTHO05D003734 6.8e-23 111.7 188 34.6
MBI13_g04500_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 1.2e-22 110.9 190 40.0
QL02p059844 Quercus lobata HOM05D003288 ORTHO05D003734 1.2e-22 110.9 188 36.2
ECA238G4239 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.5e-22 110.5 190 38.9
MD09G1266100 Malus domestica HOM05D003288 ORTHO05D003734 1.5e-22 110.5 183 35.5
Manes.02G079400 Manihot esculenta HOM05D003288 ORTHO05D003734 1.5e-22 110.5 188 33.0
HanXRQChr03g0092541 Helianthus annuus HOM05D003288 ORTHO05D003734 2.0e-22 110.2 178 36.5
Lj5g0021383 Lotus japonicus HOM05D003288 ORTHO05D003734 2.6e-22 109.8 188 36.7
Lsat_1_v5_gn_3_125960 Lactuca sativa HOM05D003288 ORTHO05D003734 3.4e-22 109.4 186 38.7
Nn5g28678 Nelumbo nucifera HOM05D003288 ORTHO05D003734 3.4e-22 109.4 255 31.8
Cc02_g09200 Coffea canephora HOM05D003288 ORTHO05D003734 4.4e-22 109.0 191 35.1
Medtr2g063863 Medicago truncatula HOM05D003288 ORTHO05D003734 4.4e-22 109.0 193 37.3
ECA240G3548 Erigeron canadensis HOM05D003288 ORTHO05D003734 5.8e-22 108.6 186 38.7
Cpa.g.sc116.89 Carica papaya HOM05D003288 ORTHO05D003734 7.5e-22 108.2 188 34.0
Thecc.04G002400 Theobroma cacao HOM05D003288 ORTHO05D003734 7.5e-22 108.2 188 35.6
Glyma.05G018700 Glycine max HOM05D003288 ORTHO05D003734 9.8e-22 107.8 181 37.0
THA.LOC104805982 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 1.3e-21 107.5 188 37.2
Glyma.18G042400 Glycine max HOM05D003288 ORTHO05D003734 1.7e-21 107.1 182 39.0
THA.LOC104805978 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 1.7e-21 107.1 188 37.2
TWI74G0189 Tripterygium wilfordii HOM05D003288 ORTHO05D003734 1.7e-21 107.1 186 37.6
Prupe.3G163900 Prunus persica HOM05D003288 ORTHO05D003734 2.2e-21 106.7 183 35.0
ClCG10G010670 Citrullus lanatus HOM05D003288 ORTHO05D003734 3.7e-21 105.9 186 36.6
CDE07G0160 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 6.4e-21 105.1 183 38.3
HanXRQChr03g0092531 Helianthus annuus HOM05D003288 ORTHO05D003734 6.4e-21 105.1 184 35.3
Oeu009426.1 Olea europaea HOM05D003288 ORTHO05D003734 6.4e-21 105.1 187 35.8
Thecc.04G002200 Theobroma cacao HOM05D003288 ORTHO05D003734 6.4e-21 105.1 188 35.6
SalBow4G2398 Salvia bowleyana HOM05D003288 ORTHO05D003734 1.4e-20 104.0 189 33.9
Glyma.11G214200 Glycine max HOM05D003288 ORTHO05D003734 2.4e-20 103.2 179 37.4
CDE06G2565 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 3.2e-20 102.8 192 35.4
Duzib138G1645 Durio zibethinus HOM05D003288 ORTHO05D003734 3.2e-20 102.8 191 36.1
ECA234G0526 Erigeron canadensis HOM05D003288 ORTHO05D003734 3.2e-20 102.8 194 36.1
Potri.017G137100 Populus trichocarpa HOM05D003288 ORTHO05D003734 3.2e-20 102.8 188 35.1
Lj2g0015416 Lotus japonicus HOM05D003288 ORTHO05D003734 4.1e-20 102.4 188 36.7
AL8G31020 Arabidopsis lyrata HOM05D003288 ORTHO05D003734 5.4e-20 102.1 187 34.2
Peaxi162Scf00039g01122 Petunia axillaris HOM05D003288 ORTHO05D003734 9.2e-20 101.3 187 34.2
RcHm_v2.0_Chr2g0142951 Rosa chinensis HOM05D003288 ORTHO05D003734 9.2e-20 101.3 183 35.5
Carub.0008s1584 Capsella rubella HOM05D003288 ORTHO05D003734 1.2e-19 100.9 187 33.7
Sabra17G0114500 Salix brachista HOM05D003288 ORTHO05D003734 1.2e-19 100.9 188 34.0
Sabra17G0111800 Salix brachista HOM05D003288 ORTHO05D003734 1.6e-19 100.5 188 33.5
TAR629G0745 Trochodendron aralioides HOM05D003288 ORTHO05D003734 1.6e-19 100.5 189 37.0
FAN09G4788 Fragaria x ananassa HOM05D003288 ORTHO05D003734 2.0e-19 100.1 183 35.0
Gohir.A12G143700 Gossypium hirsutum HOM05D003288 ORTHO05D003734 2.0e-19 100.1 180 35.0
Thhalv10015474m.g Eutrema salsugineum HOM05D003288 ORTHO05D003734 2.7e-19 99.8 185 34.1
FvH4_6g33230 Fragaria vesca HOM05D003288 ORTHO05D003734 2.7e-19 99.8 183 35.0
FAN14G0969 Fragaria x ananassa HOM05D003288 ORTHO05D003734 2.7e-19 99.8 183 35.0
Oeu048956.1 Olea europaea HOM05D003288 ORTHO05D003734 3.5e-19 99.4 186 35.5
TPR.G8950 Trifolium pratense HOM05D003288 ORTHO05D003734 3.5e-19 99.4 187 36.9
C03p16470 Brassica napus HOM05D003288 ORTHO05D003734 4.6e-19 99.0 190 33.2
FAN05G3577 Fragaria x ananassa HOM05D003288 ORTHO05D003734 4.6e-19 99.0 183 34.4
BcaB08g35905 Brassica carinata HOM05D003288 ORTHO05D003734 6.0e-19 98.6 186 32.8
unitig_748.g8456 Utricularia gibba HOM05D003288 ORTHO05D003734 6.0e-19 98.6 178 36.5
BcaC01g06370 Brassica carinata HOM05D003288 ORTHO05D003734 7.8e-19 98.2 190 33.2
BolC3t14067H Brassica oleracea HOM05D003288 ORTHO05D003734 7.8e-19 98.2 190 33.2
FAN02G3499 Fragaria x ananassa HOM05D003288 ORTHO05D003734 7.8e-19 98.2 183 34.4
Gohir.D12G148400 Gossypium hirsutum HOM05D003288 ORTHO05D003734 7.8e-19 98.2 177 34.5
Psat1g016080 Pisum sativum HOM05D003288 ORTHO05D003734 7.8e-19 98.2 191 35.1
Aa31LG2G2840 Aethionema arabicum HOM05D003288 ORTHO05D003734 1.0e-18 97.8 187 36.9
VMungo0331G0333 Vigna mungo HOM05D003288 ORTHO05D003734 1.0e-18 97.8 179 36.9
VMungo1383G3441 Vigna mungo HOM05D003288 ORTHO05D003734 1.0e-18 97.8 178 37.1
A10p12610 Brassica napus HOM05D003288 ORTHO05D003734 1.7e-18 97.1 185 33.0
EL10As8g23882 Beta vulgaris HOM05D003288 ORTHO05D003734 3.0e-18 96.3 192 34.4
Sabra17G0111500 Salix brachista HOM05D003288 ORTHO05D003734 3.0e-18 96.3 179 33.5
SHI30119 Sapria himalayana HOM05D003288 ORTHO05D003734 3.0e-18 96.3 188 34.0
Sp6g17370 Schrenkiella parvula HOM05D003288 ORTHO05D003734 3.0e-18 96.3 185 32.4
A03p14030 Brassica napus HOM05D003288 ORTHO05D003734 3.9e-18 95.9 190 33.2
BcaNung05847 Brassica carinata HOM05D003288 ORTHO05D003734 5.0e-18 95.5 186 32.8
C09p46140 Brassica napus HOM05D003288 ORTHO05D003734 5.0e-18 95.5 186 32.8
BolC9t57480H Brassica oleracea HOM05D003288 ORTHO05D003734 5.0e-18 95.5 186 32.8
Lalb_Chr05g0212271 Lupinus albus HOM05D003288 ORTHO05D003734 5.0e-18 95.5 185 33.5
Medtr2g093230 Medicago truncatula HOM05D003288 ORTHO05D003734 5.0e-18 95.5 188 35.6
CSS0016947 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 6.6e-18 95.1 188 34.0
CARHR268800 Cardamine hirsuta HOM05D003288 ORTHO05D003734 6.6e-18 95.1 188 34.0
Lsat_1_v5_gn_3_104940 Lactuca sativa HOM05D003288 ORTHO05D003734 6.6e-18 95.1 186 34.9
BraA03t10702Z Brassica rapa HOM05D003288 ORTHO05D003734 8.6e-18 94.7 190 32.6
AUR62035243 Chenopodium quinoa HOM05D003288 ORTHO05D003734 8.6e-18 94.7 191 33.0
AUR62007625 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.1e-17 94.4 191 32.5
Medtr6g091980 Medicago truncatula HOM05D003288 ORTHO05D003734 1.1e-17 94.4 182 37.4
CANSAT64G0297 Cannabis sativa HOM05D003288 ORTHO05D003734 1.5e-17 94.0 190 35.8
Medtr2g063823 Medicago truncatula HOM05D003288 ORTHO05D003734 1.5e-17 94.0 183 37.2
Medtr2g063920 Medicago truncatula HOM05D003288 ORTHO05D003734 1.5e-17 94.0 182 35.7
BraA10t43361Z Brassica rapa HOM05D003288 ORTHO05D003734 1.9e-17 93.6 185 31.9
Phvul.001G228800 Phaseolus vulgaris HOM05D003288 ORTHO05D003734 1.9e-17 93.6 179 35.8
TPR.G37900 Trifolium pratense HOM05D003288 ORTHO05D003734 1.9e-17 93.6 189 33.9
Atru.chr6.3343 Acer truncatum HOM05D003288 ORTHO05D003734 4.3e-17 92.4 190 34.7
AUR62004111 Chenopodium quinoa HOM05D003288 ORTHO05D003734 4.3e-17 92.4 192 32.8
AUR62017809 Chenopodium quinoa HOM05D003288 ORTHO05D003734 4.3e-17 92.4 191 35.1
Sc18g0007110 Simmondsia chinensis HOM05D003288 ORTHO05D003734 4.3e-17 92.4 186 33.9
Rhsim10G0182400 Rhododendron simsii HOM05D003288 ORTHO05D003734 9.5e-17 91.3 187 32.6
Aqoxy2G03361 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 2.8e-16 89.7 217 34.1
EL10Ac6g15375 Beta vulgaris HOM05D003288 ORTHO05D003734 2.8e-16 89.7 191 34.6
Nitab4.5_0001781g0030 Nicotiana tabacum HOM05D003288 ORTHO05D003734 6.2e-16 88.6 185 34.6
ATR0598G225 Amborella trichopoda HOM05D003288 ORTHO05D003734 1.1e-15 87.8 181 34.8
AUR62003503 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.8e-15 87.0 212 30.7
Rhsim12G0111000 Rhododendron simsii HOM05D003288 ORTHO05D003734 2.3e-15 86.7 182 31.3
Glyma.17G081050 Glycine max HOM05D003288 ORTHO05D003734 3.1e-15 86.3 181 34.8
Zm00001eb314230 Zea mays HOM05D003288 ORTHO05D003734 4.0e-15 85.9 210 31.9
PGR083G1244 Punica granatum HOM05D003288 ORTHO05D003734 6.8e-15 85.1 181 31.5
Haze_12714 Corylus avellana HOM05D003288 ORTHO05D003734 8.9e-15 84.7 189 33.9
vmacro23304 Vaccinium macrocarpon HOM05D003288 ORTHO05D003734 1.5e-14 84.0 201 31.8
MBI13_g04499_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 4.4e-14 82.4 127 40.9
QL09p034880 Quercus lobata HOM05D003288 ORTHO05D003734 2.2e-13 80.1 191 31.9
EL10Ac6g15379 Beta vulgaris HOM05D003288 ORTHO05D003734 2.9e-13 79.7 191 32.5
Os09g0442400 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 2.9e-13 79.7 211 31.3
Lj2C515T4 Lonicera japonica HOM05D003288 ORTHO05D003734 1.9e-12 77.0 127 35.4
Nitab4.5_0002640g0060 Nicotiana tabacum HOM05D003288 ORTHO05D003734 7.0e-12 75.1 184 31.5
Psat0s1991g0080 Pisum sativum HOM05D003288 ORTHO05D003734 9.2e-12 74.7 150 34.7
Prupe.3G204300 Prunus persica HOM05D003288 ORTHO05D003734 3.5e-11 72.8 187 31.6
SGA_v2.0_scaffold96G29122 Striga asiatica HOM05D003288 ORTHO05D003734 4.6e-11 72.4 143 33.6
FAN02G4572 Fragaria x ananassa HOM05D003288 ORTHO05D003734 6.0e-11 72.0 192 29.2
DCAR_014148 Daucus carota HOM05D003288 ORTHO05D003734 2.3e-10 70.1 172 30.2
Actinidia17186 Actinidia chinensis HOM05D003288 ORTHO05D003734 1.5e-09 67.4 188 29.3
SEGI_20345 Sequoiadendron giganteum HOM05D003288 ORTHO05D003734 2.5e-09 66.6 205 30.7
MELO3C019571.2 Cucumis melo HOM05D003288 ORTHO05D003734 7.3e-09 65.1 181 28.2
PGSC0003DMG400000983 Solanum tuberosum HOM05D003288 ORTHO05D003734 2.1e-08 63.5 104 38.5
FvH4_6g41730 Fragaria vesca HOM05D003288 ORTHO05D003734 2.8e-08 63.2 188 27.7
QL05p025425 Quercus lobata HOM05D003288 ORTHO05D003734 8.1e-08 61.6 76 46.1
CSS0049339 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 1.4e-07 60.8 190 29.5
FAN14G3219 Fragaria x ananassa HOM05D003288 ORTHO05D003734 3.1e-07 59.7 188 27.1
CAN.G582.21 Capsicum annuum HOM05D003288 ORTHO05D003734 1.5e-06 57.4 214 28.0
ECA240G0593 Erigeron canadensis HOM05D003288 ORTHO05D003734 9.9e-06 54.7 141 30.5


User provided reference genes

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