Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 5.8e-145 518.1 383 100.0
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.4e-133 480.3 383 90.9
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 5.1e-24 116.3 86 65.1
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.7e-24 115.9 72 72.2
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.5e-23 114.8 79 69.6
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 9.7e-23 112.1 61 80.3
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.8e-22 110.5 72 70.8
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 3.7e-22 110.2 64 76.6
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 8.2e-22 109.0 87 62.1
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.4e-21 107.5 72 69.4
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.4e-21 107.5 72 68.1
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.1e-21 106.7 70 71.4
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 9.1e-21 105.5 74 68.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 9.1e-21 105.5 80 65.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.5e-20 104.8 74 68.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.5e-20 104.8 72 66.7
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.5e-20 104.8 82 62.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.0e-20 104.4 72 68.1
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 2.6e-20 104.0 91 57.1
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.4e-20 103.6 72 65.3
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.5e-20 103.2 65 73.8
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 4.5e-20 103.2 72 66.7
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.5e-20 103.2 72 66.7
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.5e-20 103.2 75 66.7
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.9e-20 102.8 72 66.7
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.9e-20 102.8 72 66.7
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.9e-20 102.8 79 62.0
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.7e-20 102.4 72 66.7
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.0e-19 102.1 82 59.8
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-19 102.1 75 65.3
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.3e-19 101.7 65 70.8
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.3e-19 101.7 71 63.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.7e-19 101.3 84 59.5
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.7e-19 101.3 72 66.7
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.7e-19 101.3 72 66.7
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.7e-19 101.3 72 66.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.7e-19 101.3 72 66.7
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.7e-19 101.3 67 67.2
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.7e-19 101.3 66 69.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.7e-19 101.3 79 60.8
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.7e-19 101.3 70 67.1
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.7e-19 101.3 66 72.7
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-19 100.9 70 67.1
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-19 100.9 73 67.1
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.8e-19 100.1 66 68.2
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 5.0e-19 99.8 89 57.3
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.0e-19 99.8 89 57.3
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.0e-19 99.8 89 57.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 5.0e-19 99.8 66 69.7
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 5.0e-19 99.8 81 61.7
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.5e-19 99.4 66 69.7
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 6.5e-19 99.4 73 65.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 8.5e-19 99.0 89 56.2
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.5e-19 99.0 89 57.3
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.5e-19 99.0 89 57.3
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.1e-18 98.6 67 62.7
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.1e-18 98.6 72 65.3
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.1e-18 98.6 61 73.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.4e-18 98.2 85 52.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.4e-18 98.2 85 56.5
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.9e-18 97.8 64 65.6
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.9e-18 97.8 79 59.5
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.9e-18 97.8 65 69.2
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.5e-18 97.4 72 65.3
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.2e-18 97.1 83 59.0
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 5.5e-18 96.3 72 63.9
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 5.5e-18 96.3 72 63.9
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 5.5e-18 96.3 62 71.0
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 5.5e-18 96.3 62 71.0
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 7.2e-18 95.9 65 69.2
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 7.2e-18 95.9 72 63.9
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 7.2e-18 95.9 72 63.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 7.2e-18 95.9 72 63.9
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.2e-18 95.9 62 67.7
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.2e-18 95.9 62 67.7
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.2e-18 95.9 62 67.7
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.2e-18 95.9 71 60.6
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 9.4e-18 95.5 64 67.2
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.2e-17 95.1 81 56.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.2e-17 95.1 71 57.7
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.6e-17 94.7 64 70.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.7e-17 94.0 66 66.7
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.7e-17 94.0 66 66.7
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.7e-17 94.0 66 66.7
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.7e-17 94.0 79 59.5
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 7.9e-17 92.4 72 58.3
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 7.9e-17 92.4 66 66.7
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.8e-16 91.3 59 71.2
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-16 90.9 79 53.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-16 90.1 79 51.9
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-16 90.1 79 51.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.7e-16 89.4 84 52.4
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.8e-16 89.0 83 54.2
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.8e-16 89.0 83 55.4
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.1e-15 88.6 75 57.3
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-15 88.2 79 50.6
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.5e-15 88.2 65 61.5
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.6e-15 87.4 64 60.9
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.4e-15 86.7 83 54.2
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 5.7e-15 86.3 74 55.4
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 9.7e-15 85.5 71 60.6
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.3e-14 85.1 71 59.2
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.3e-14 85.1 66 63.6
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 3.7e-14 83.6 73 52.1
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 8.2e-14 82.4 64 62.5
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.8e-13 81.3 68 55.9
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 2.4e-13 80.9 67 59.7
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 6.9e-13 79.3 68 54.4
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 6.9e-13 79.3 67 58.2
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.2e-12 78.6 50 74.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.0e-12 77.8 67 58.2
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.6e-12 77.4 217 30.4
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 3.4e-12 77.0 90 47.8
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 3.4e-12 77.0 90 47.8
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.9e-12 76.3 65 55.4
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.7e-11 74.7 65 53.8
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.2e-11 74.3 77 46.8
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 8.5e-11 72.4 70 50.0
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.9e-10 71.2 67 53.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.5e-10 70.9 64 54.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.5e-10 70.9 64 54.7
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.2e-10 70.5 52 61.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 7.2e-10 69.3 212 30.7
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.6e-09 68.2 66 51.5
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 2.1e-09 67.8 66 53.0
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.6e-09 67.0 68 50.0
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 6.1e-09 66.2 70 42.9
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.0e-08 65.5 95 37.9
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.4e-08 65.1 76 48.7
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.0e-08 63.9 49 61.2
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.0e-08 63.9 62 53.2
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 3.9e-08 63.5 46 65.2
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 3.9e-08 63.5 46 65.2
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 3.9e-08 63.5 70 51.4
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 6.7e-08 62.8 65 52.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.7e-08 62.8 72 48.6
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-07 62.0 62 46.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 4.4e-07 60.1 92 34.8
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 5.7e-07 59.7 46 63.0
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 5.7e-07 59.7 68 44.1
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 7.4e-07 59.3 45 60.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.3e-06 58.5 75 41.3
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 1.3e-06 58.5 34 70.6
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.7e-06 58.2 75 41.3
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 1.7e-06 58.2 38 71.1
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 8.2e-06 55.8 65 47.7


User provided reference genes

Program Settings