Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.6e-200 702.6 366 100.0
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 5.3e-196 687.6 366 97.8
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.4e-133 477.6 333 75.1
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 2.7e-131 472.6 370 70.5
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.6e-131 471.9 300 82.0
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 8.7e-130 467.6 302 81.1
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 8.7e-130 467.6 322 77.3
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.9e-129 466.5 372 70.2
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 7.3e-129 464.5 303 81.2
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 1.6e-128 463.4 366 70.5
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.1e-128 463.0 371 70.6
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.6e-128 462.2 380 68.4
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 3.6e-128 462.2 302 80.8
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 3.6e-128 462.2 309 78.0
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 4.8e-128 461.8 379 68.3
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.1e-127 460.7 369 70.2
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.4e-127 460.3 307 79.5
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.4e-127 460.3 369 70.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.4e-127 459.5 338 71.9
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.4e-127 459.5 369 70.5
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 3.1e-127 459.1 371 69.8
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 4.0e-127 458.8 378 66.9
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 5.3e-127 458.4 364 70.3
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 9.0e-127 457.6 375 68.5
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 9.0e-127 457.6 338 74.3
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.2e-126 457.2 376 68.4
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.2e-126 457.2 368 68.5
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.5e-126 456.8 314 76.8
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.5e-126 456.8 371 67.4
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.4e-126 455.7 318 77.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.4e-126 455.7 310 77.4
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 5.8e-126 454.9 260 88.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 5.8e-126 454.9 373 68.4
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 7.6e-126 454.5 370 70.0
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 9.9e-126 454.1 290 82.1
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 9.9e-126 454.1 313 77.3
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.3e-125 453.8 324 75.6
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.7e-125 453.4 373 68.9
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.7e-125 453.4 305 78.0
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.7e-125 453.4 265 85.7
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.7e-125 453.4 265 85.7
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.2e-125 453.0 370 69.2
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.2e-125 453.0 306 79.1
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.9e-125 452.6 338 73.1
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.9e-125 452.6 317 75.1
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.9e-125 452.6 304 77.6
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 4.9e-125 451.8 372 68.0
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 4.9e-125 451.8 313 76.4
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 8.4e-125 451.1 301 79.1
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 8.4e-125 451.1 375 66.7
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.1e-124 450.7 304 76.0
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.4e-124 450.3 347 72.3
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.4e-124 450.3 326 74.8
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.4e-124 450.3 313 76.4
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.9e-124 449.9 321 75.4
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.9e-124 449.9 326 73.9
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 4.2e-124 448.7 308 76.9
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 4.2e-124 448.7 311 77.2
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 4.2e-124 448.7 363 69.1
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 5.4e-124 448.4 294 79.9
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 7.1e-124 448.0 274 82.8
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.2e-123 447.2 358 69.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.2e-123 447.2 308 74.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.6e-123 446.8 345 73.0
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.1e-123 446.4 298 78.5
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.1e-123 446.4 294 80.3
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.1e-123 446.4 295 76.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.7e-123 446.0 327 74.3
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.7e-123 446.0 318 74.2
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.7e-123 446.0 307 76.2
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.5e-123 445.7 374 68.2
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 4.6e-123 445.3 297 77.8
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 6.0e-123 444.9 308 76.3
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.9e-123 444.5 327 74.0
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.0e-122 444.1 369 68.6
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.3e-122 443.7 309 74.8
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.3e-122 443.7 309 74.8
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.7e-122 443.4 307 76.2
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.7e-122 443.4 282 83.0
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 2.3e-122 443.0 311 77.8
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.3e-122 443.0 311 77.8
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.3e-122 443.0 311 77.8
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.0e-122 442.6 308 77.6
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.0e-122 442.6 315 74.3
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.9e-122 442.2 308 78.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 3.9e-122 442.2 310 75.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 8.7e-122 441.0 299 76.6
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.1e-121 440.7 307 76.2
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.9e-121 439.9 333 69.1
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-121 439.5 295 77.6
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 2.5e-121 439.5 321 73.8
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 5.6e-121 438.3 338 70.1
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 5.6e-121 438.3 295 78.0
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 9.6e-121 437.6 338 70.1
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 9.6e-121 437.6 295 76.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 1.6e-120 436.8 339 70.5
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.6e-120 436.8 295 78.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.6e-120 436.8 295 78.0
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.6e-120 436.8 298 77.2
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.1e-120 436.4 371 66.6
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.1e-120 436.4 275 82.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 4.8e-120 435.3 326 71.5
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 8.1e-120 434.5 309 75.1
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 8.1e-120 434.5 275 82.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 8.1e-120 434.5 369 66.1
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-119 434.1 341 70.1
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.4e-119 433.7 319 73.4
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 6.9e-119 431.4 275 81.1
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 6.9e-119 431.4 341 69.8
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 6.9e-119 431.4 321 72.9
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 9.0e-119 431.0 396 62.1
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.2e-118 430.6 317 72.6
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 4.5e-118 428.7 367 66.5
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 4.5e-118 428.7 305 75.1
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.8e-117 425.6 324 70.7
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.4e-116 423.7 329 69.9
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 3.2e-116 422.5 333 69.1
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 7.1e-116 421.4 244 88.5
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.9e-114 415.6 293 74.7
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.5e-113 413.7 316 72.2
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.3e-112 410.6 369 64.5
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.4e-111 407.1 384 61.2
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.1e-111 406.0 307 69.4
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 3.1e-111 406.0 374 61.2
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.2e-110 404.1 342 65.8
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.2e-109 399.8 225 90.2
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.2e-109 399.8 247 82.2
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 4.9e-109 398.7 298 71.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 6.5e-109 398.3 259 77.6
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 4.2e-108 395.6 278 73.0
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 4.2e-108 395.6 245 81.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 5.5e-108 395.2 293 70.6
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.1e-105 387.5 364 61.0
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.6e-104 383.6 288 68.4
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 3.7e-104 382.5 275 76.7
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.9e-97 360.1 252 68.7
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 5.0e-93 345.5 309 62.8
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 2.7e-91 339.7 251 68.9
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 2.6e-89 333.2 243 71.6
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.4e-87 327.4 296 59.5
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 6.3e-80 302.0 315 57.8
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 2.9e-69 266.5 203 68.5
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 5.5e-60 235.7 157 77.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.8e-59 233.4 148 80.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.9e-52 210.7 163 66.9
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 5.6e-52 209.1 145 73.1
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 6.4e-48 195.7 108 94.4
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.6e-37 158.7 102 79.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-36 157.9 99 80.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 4.1e-31 139.8 143 56.6
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.1e-30 137.5 130 59.2
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.3e-24 118.2 97 67.0
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.0e-21 108.6 61 90.2
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.7e-21 107.8 64 89.1


User provided reference genes

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