Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 0.0e+00 1943.3 1058 100.0
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 0.0e+00 1773.1 1070 89.6
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.2e-237 827.4 1061 46.1
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.4e-236 823.9 1059 44.9
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.9e-223 779.2 1054 44.6
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 4.3e-222 775.8 1058 44.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 5.3e-220 768.8 1067 44.2
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 6.4e-218 761.9 1070 43.4
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 7.1e-217 758.4 1056 43.4
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 5.6e-214 748.8 1068 42.2
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.6e-213 747.3 1055 43.9
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 9.9e-211 738.0 1100 40.1
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 9.3e-209 731.5 1210 40.6
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 6.0e-208 728.8 1072 41.0
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 8.7e-207 724.9 1069 42.2
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.6e-205 720.7 1220 40.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.9e-202 709.1 1056 42.9
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.2e-200 704.5 1088 40.7
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.2e-200 704.5 1088 40.2
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 2.3e-199 700.3 1050 40.6
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 5.1e-199 699.1 1105 41.4
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 6.3e-197 692.2 1066 40.9
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.0e-195 687.2 1088 40.2
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 7.6e-195 685.3 1111 40.3
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 8.4e-194 681.8 1091 40.3
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 6.7e-191 672.2 1103 40.0
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 7.4e-190 668.7 1051 38.4
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.1e-188 663.3 1057 39.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 7.7e-187 658.7 1043 39.8
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.0e-186 658.3 1048 39.9
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.1e-185 654.8 1057 40.8
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 5.5e-185 652.5 1057 39.0
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 9.4e-185 651.7 1051 38.2
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.4e-183 647.9 1092 37.6
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.3e-183 647.1 1092 39.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 3.0e-183 646.7 1071 40.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 3.9e-183 646.4 1057 38.2
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.5e-182 644.4 1086 38.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 4.3e-182 642.9 1062 39.4
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 9.7e-182 641.7 1053 39.0
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 2.8e-181 640.2 1060 39.2
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 2.8e-181 640.2 1053 39.0
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 3.1e-180 636.7 1062 38.8
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 4.1e-180 636.3 1057 38.1
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 4.1e-180 636.3 1057 38.1
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 9.1e-180 635.2 1111 37.6
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 9.1e-180 635.2 1083 37.6
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 9.1e-180 635.2 1083 37.6
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.5e-179 634.4 1057 37.6
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 3.4e-179 633.3 1056 38.0
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 5.9e-179 632.5 1055 37.6
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 7.7e-179 632.1 1065 39.2
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.2e-178 630.6 1067 38.5
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 8.5e-178 628.6 930 42.7
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.1e-177 628.2 1070 36.6
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.1e-177 628.2 1181 37.2
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.4e-177 627.9 1092 37.6
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.9e-177 627.5 1059 37.6
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.9e-177 627.5 1063 40.0
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.5e-177 627.1 1052 37.3
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 7.2e-177 625.5 1067 38.4
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.4e-175 621.3 1073 35.8
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 3.0e-175 620.2 1052 37.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.9e-175 619.8 1093 39.5
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.6e-174 617.1 1080 37.8
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.7e-173 614.4 1089 39.0
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 8.2e-173 612.1 1002 38.7
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.4e-172 610.5 1091 36.7
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.1e-172 610.1 1082 38.4
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 4.1e-172 609.8 1066 36.8
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.2e-171 608.2 1069 37.8
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.0e-171 607.4 1092 39.7
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 3.6e-168 596.7 1155 35.5
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.7e-166 588.6 1085 37.2
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.2e-165 587.4 1063 38.0
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 2.8e-165 587.0 1095 39.1
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.8e-165 587.0 1059 37.7
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 6.3e-165 585.9 1083 36.8
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 4.1e-164 583.2 1054 37.1
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.0e-163 580.9 1068 42.2
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.7e-163 580.5 1066 35.4
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.5e-163 580.1 1075 38.0
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-162 578.6 1139 36.7
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.9e-161 574.3 944 39.0
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 4.2e-161 573.2 879 41.4
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 8.0e-160 568.9 1054 37.1
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.8e-159 565.8 1231 33.1
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.8e-157 560.5 495 56.2
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.1e-156 558.5 1045 36.7
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.2e-154 550.8 1067 37.1
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 4.0e-151 540.0 1076 34.8
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.3e-149 532.7 868 40.2
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 3.1e-148 530.4 844 40.2
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 9.2e-148 528.9 1068 36.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.5e-147 526.9 1078 34.0
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-146 525.4 1061 35.2
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.3e-146 524.2 648 46.3
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.1e-145 521.9 1050 35.5
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 7.0e-132 476.1 1060 34.7
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.6e-130 469.5 627 43.1
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-127 462.2 906 36.1
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 4.9e-125 453.4 581 43.7
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.5e-121 439.1 1050 29.9
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 6.4e-117 426.4 521 41.8
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 7.1e-116 422.9 1067 31.1
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 5.1e-114 416.8 977 34.3
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.2e-108 397.1 320 56.2
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.0e-106 392.5 759 39.1
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 8.1e-104 382.9 804 37.1
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.1e-103 382.5 324 54.3
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 7.1e-100 369.8 477 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 3.0e-98 364.4 491 39.9
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 5.6e-97 360.1 486 39.9
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 9.6e-97 359.4 315 56.5
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.4e-87 328.9 292 54.8
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 7.4e-65 253.4 695 31.7
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.4e-62 244.6 297 45.1
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.9e-60 238.8 286 46.5
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.5e-57 229.2 211 55.0
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.2e-53 215.3 264 42.4
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.8e-50 205.7 207 51.2
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 2.3e-50 205.3 232 47.8
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.3e-50 205.3 219 49.3
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.0e-50 204.5 219 48.9
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-47 196.4 231 45.9
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 4.1e-47 194.5 131 67.9
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.0e-41 175.6 287 38.0
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.1e-39 167.9 191 42.9
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.0e-37 163.3 219 42.9
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.2e-36 157.1 173 50.3
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.0e-34 151.4 233 41.6
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.7e-32 144.8 210 45.2
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.3e-28 131.7 113 52.2
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 5.6e-28 131.0 193 40.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 2.1e-27 129.0 203 40.4
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 8.0e-27 127.1 105 55.2
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 7.5e-25 120.6 200 38.0
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.2e-23 115.2 186 39.8
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.8e-22 110.5 500 30.6
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.0e-21 110.2 115 56.5
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.3e-21 109.8 126 47.6
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.4e-16 90.9 603 25.5
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 7.0e-15 87.4 188 31.4
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 4.7e-11 74.7 105 41.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 3.1e-10 72.0 133 31.6
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 4.4e-09 68.2 161 33.5
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.1e-07 63.5 51 52.9
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.4e-07 63.2 97 40.2
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 7.1e-07 60.8 54 59.3
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 6.0e-06 57.8 31 74.2


User provided reference genes

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