Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 9.7e-95 350.1 177 100.0
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-92 342.4 177 97.7
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-87 326.2 172 95.3
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-87 326.2 175 94.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-87 325.9 177 93.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 3.6e-81 305.1 172 91.3
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-75 286.2 158 91.8
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 8.6e-75 283.9 175 80.6
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.5e-74 280.4 175 80.6
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 2.1e-73 279.3 175 79.4
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 8.0e-73 277.3 177 79.1
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.0e-73 277.3 175 78.3
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.0e-72 276.9 175 78.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.4e-72 276.6 175 77.7
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-72 275.8 175 78.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-72 275.8 175 78.9
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-72 275.8 175 78.3
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.3e-72 275.8 176 77.3
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 3.1e-72 275.4 175 78.3
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.5e-71 273.1 175 78.3
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 2.6e-71 272.3 176 76.7
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 2.6e-71 272.3 181 75.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 4.4e-71 271.6 175 78.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 4.4e-71 271.6 176 76.1
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 4.4e-71 271.6 160 81.9
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 5.8e-71 271.2 175 77.1
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 5.8e-71 271.2 174 76.4
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 5.8e-71 271.2 174 76.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 7.5e-71 270.8 167 79.6
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 7.5e-71 270.8 178 74.2
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 7.5e-71 270.8 167 81.4
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.3e-70 270.0 175 76.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.7e-70 269.6 176 76.1
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.7e-70 269.6 175 77.7
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.7e-70 269.6 160 81.9
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.7e-70 269.6 174 76.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.7e-70 269.6 167 80.2
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.2e-70 269.2 175 77.1
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 2.2e-70 269.2 154 84.4
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.9e-70 268.9 180 76.7
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.9e-70 268.9 175 77.7
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 3.7e-70 268.5 161 81.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 4.9e-70 268.1 177 74.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 6.4e-70 267.7 177 75.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 8.3e-70 267.3 182 73.1
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.4e-69 266.5 167 79.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.9e-69 266.2 176 74.4
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.9e-69 266.2 179 72.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.9e-69 266.2 157 80.9
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.9e-69 266.2 175 77.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.4e-69 265.8 175 74.9
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.4e-69 265.8 159 81.1
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.4e-69 265.8 178 73.6
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 3.2e-69 265.4 159 80.5
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 5.4e-69 264.6 175 74.3
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 5.4e-69 264.6 167 77.2
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.4e-69 264.6 178 74.7
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 5.4e-69 264.6 162 75.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 7.0e-69 264.2 175 76.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 7.0e-69 264.2 159 80.5
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 9.2e-69 263.8 175 74.9
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 9.2e-69 263.8 161 78.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.2e-68 263.5 176 73.3
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.6e-68 263.1 198 69.2
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.6e-68 263.1 177 73.4
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.6e-68 263.1 176 73.9
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.6e-68 263.1 173 74.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.7e-68 262.3 177 74.0
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.7e-68 262.3 177 73.4
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.7e-68 262.3 177 73.4
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 3.5e-68 261.9 175 74.9
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 3.5e-68 261.9 159 80.5
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.5e-68 261.9 159 80.5
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 3.5e-68 261.9 173 74.6
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.6e-68 261.5 175 73.1
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 6.0e-68 261.2 158 77.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 7.8e-68 260.8 159 79.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.0e-67 260.4 162 78.4
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.0e-67 260.4 167 76.6
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.3e-67 260.0 160 76.2
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 6.6e-67 257.7 167 76.6
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 8.6e-67 257.3 175 73.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.1e-66 256.9 158 78.5
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.1e-66 256.9 178 73.6
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.5e-66 256.5 159 75.5
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.9e-66 256.1 169 75.1
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.9e-66 256.1 177 70.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.5e-66 255.8 160 76.9
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 5.6e-66 254.6 167 76.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 5.6e-66 254.6 175 71.4
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 7.3e-66 254.2 169 75.1
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.2e-65 253.4 160 76.2
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.1e-65 252.7 175 72.0
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 2.1e-65 252.7 156 80.8
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 6.2e-65 251.1 159 74.2
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.3e-64 249.2 167 76.0
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.3e-64 249.2 159 76.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 75.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 6.8e-64 247.7 145 79.3
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.9e-64 247.3 142 83.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 8.9e-64 247.3 175 68.6
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.2e-63 246.9 175 68.6
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.0e-63 246.1 144 81.9
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.6e-63 245.7 145 81.4
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.4e-63 245.4 148 81.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.4e-63 245.0 145 82.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 4.9e-62 241.5 171 70.2
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.4e-61 240.0 173 69.9
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.6e-60 236.5 146 77.4
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.6e-60 236.5 167 71.3
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.6e-60 235.0 126 96.0
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.7e-59 233.0 159 71.7
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 5.1e-59 231.5 140 77.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 6.6e-59 231.1 137 81.0
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-58 230.3 137 82.5
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.5e-58 227.3 172 70.3
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-55 220.3 175 66.3
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.5e-50 202.6 135 74.1
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 5.6e-50 201.4 155 60.6
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.1e-49 197.6 176 61.4
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.4e-48 196.8 117 80.3
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 4.4e-47 191.8 175 50.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 7.6e-47 191.0 160 61.2
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 7.1e-45 184.5 109 80.7
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.3e-43 179.5 110 74.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.3e-43 179.5 117 76.1
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.9e-43 178.7 141 66.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.4e-39 165.6 113 71.7
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.4e-37 160.2 150 51.3
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.5e-34 150.2 111 64.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.6e-33 146.7 125 64.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 4.8e-33 145.2 93 74.2
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.8e-32 143.3 81 80.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.8e-31 138.3 119 58.8
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.6e-31 137.9 151 50.3
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.9e-29 133.3 184 46.7
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.7e-28 129.4 81 72.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.9e-27 125.6 68 82.4
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.9e-27 125.6 81 72.8
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.5e-26 123.6 89 65.2
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.4e-26 121.3 154 47.4
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.5e-23 113.6 80 73.8
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.8e-23 111.7 120 55.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.7e-22 110.2 64 81.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-18 97.1 81 59.3
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.3e-18 95.5 66 63.6
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.6e-17 93.6 52 82.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.6e-15 86.3 58 65.5
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.5e-13 79.7 61 54.1
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-08 63.5 36 86.1


User provided reference genes

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