Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-172 609.4 317 100.0
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 9.8e-138 493.8 317 85.5
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 6.4e-121 438.0 318 80.2
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 3.0e-118 429.1 321 79.8
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 6.3e-60 235.3 324 50.9
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.7e-58 228.4 321 49.5
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.3e-37 159.8 184 52.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.3e-37 159.8 179 53.6
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 5.7e-37 159.1 316 38.3
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.2e-34 151.4 232 45.3
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.7e-34 148.7 206 45.6
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.5e-32 143.7 177 45.2
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.2e-32 142.1 195 45.6
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.6e-31 139.8 321 35.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 6.1e-31 139.0 173 48.0
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 8.0e-31 138.7 187 44.4
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.3e-30 137.1 321 35.8
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.4e-29 132.9 181 42.5
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 4.4e-29 132.9 178 45.5
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.2e-28 130.6 183 41.5
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 3.7e-28 129.8 192 42.2
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 4.8e-28 129.4 196 42.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 6.3e-28 129.0 190 41.6
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.1e-27 128.3 188 42.0
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.1e-27 128.3 170 43.5
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.4e-27 127.9 178 43.8
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.4e-27 127.1 184 42.4
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.1e-27 126.7 187 41.2
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.2e-26 124.8 221 37.1
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-26 124.0 179 43.0
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.7e-26 123.6 178 43.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.5e-26 123.2 188 39.9
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.5e-26 123.2 188 39.9
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 3.5e-26 123.2 182 44.5
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.5e-26 122.9 241 37.8
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.9e-26 122.5 182 42.3
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 7.7e-26 122.1 214 38.3
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.7e-25 120.9 196 39.8
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-25 120.9 180 41.7
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.7e-25 120.9 214 38.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.7e-25 120.9 218 36.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.7e-25 120.9 191 39.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 2.3e-25 120.6 188 38.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.3e-25 120.6 189 38.6
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.3e-25 120.6 179 41.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.3e-25 120.6 180 42.2
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.3e-25 120.6 182 41.8
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.9e-25 120.2 248 34.7
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.0e-25 119.4 188 38.8
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 6.5e-25 119.0 195 39.5
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 6.5e-25 119.0 193 39.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.5e-25 119.0 223 40.4
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.5e-25 119.0 223 40.4
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.1e-24 118.2 188 40.4
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.1e-24 118.2 188 40.4
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-24 118.2 181 42.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-24 117.9 188 37.8
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.5e-24 117.9 188 37.8
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.9e-24 117.5 192 39.6
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.5e-24 117.1 183 41.0
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.5e-24 117.1 201 39.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 3.2e-24 116.7 192 38.5
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 4.2e-24 116.3 188 39.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 4.2e-24 116.3 188 39.9
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 4.2e-24 116.3 203 43.3
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 4.2e-24 116.3 185 38.9
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 4.2e-24 116.3 181 39.8
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.2e-24 116.3 181 39.8
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.2e-24 116.3 236 34.7
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 9.5e-24 115.2 193 39.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 9.5e-24 115.2 188 39.4
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 9.5e-24 115.2 204 36.8
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 9.5e-24 115.2 181 39.2
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-23 114.8 224 36.6
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.2e-23 114.8 179 40.8
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-23 114.8 197 36.5
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.6e-23 114.4 197 37.1
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.1e-23 114.0 196 36.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.8e-23 113.6 217 37.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.8e-23 113.6 217 37.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 2.8e-23 113.6 193 38.3
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.6e-23 113.2 183 38.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 3.6e-23 113.2 180 43.9
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.7e-23 112.8 223 34.5
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 4.7e-23 112.8 194 38.1
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.7e-23 112.8 188 38.3
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 6.1e-23 112.5 218 36.7
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 6.1e-23 112.5 212 37.3
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 6.1e-23 112.5 198 36.9
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 8.0e-23 112.1 188 38.8
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 8.0e-23 112.1 184 40.8
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 8.0e-23 112.1 178 42.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 8.0e-23 112.1 191 37.2
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.0e-22 111.7 190 41.6
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.0e-22 111.7 188 42.0
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.0e-22 111.7 207 36.7
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.0e-22 111.7 191 38.2
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.0e-22 111.7 183 38.8
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.4e-22 111.3 182 38.5
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.4e-22 111.3 186 39.2
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.4e-22 111.3 181 38.7
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.8e-22 110.9 179 43.6
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 1.8e-22 110.9 180 39.4
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.8e-22 110.9 181 40.9
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 3.0e-22 110.2 229 34.9
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 3.0e-22 110.2 229 34.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 3.0e-22 110.2 196 36.2
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.0e-22 110.2 196 36.2
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 3.0e-22 110.2 178 42.1
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 4.0e-22 109.8 179 41.3
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.0e-22 109.8 179 41.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.8e-22 109.0 192 38.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.2e-21 108.2 199 38.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.5e-21 107.8 188 40.4
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.5e-21 107.8 174 40.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 2.0e-21 107.5 181 39.8
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 2.6e-21 107.1 207 38.2
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 4.4e-21 106.3 197 33.0
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.4e-21 106.3 215 37.2
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 7.5e-21 105.5 224 34.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.8e-21 105.1 180 37.2
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 9.8e-21 105.1 180 38.9
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.7e-20 104.4 178 38.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 3.7e-20 103.2 178 37.6
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 4.9e-20 102.8 183 38.3
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 4.9e-20 102.8 200 33.5
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 8.3e-20 102.1 212 33.0
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.8e-19 100.9 210 38.6
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 4.1e-19 99.8 199 38.2
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 5.4e-19 99.4 185 37.3
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 9.2e-19 98.6 182 37.4
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.2e-19 98.6 182 36.8
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.6e-18 97.8 201 35.8
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.0e-18 97.4 172 37.8
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.7e-18 97.1 214 35.0
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 2.7e-18 97.1 189 34.9
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.5e-18 96.7 267 33.3
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 3.5e-18 96.7 171 39.2
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.5e-18 96.7 180 38.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.9e-18 95.9 192 37.5
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.9e-16 90.9 185 36.2
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.3e-16 90.1 181 39.2
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-16 89.7 207 31.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.3e-16 89.0 178 33.1
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 9.5e-16 88.6 207 30.9
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.2e-15 88.2 255 28.6
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.6e-15 87.8 173 37.6
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.7e-15 86.3 207 31.4
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 6.1e-15 85.9 169 36.1
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.0e-15 85.5 169 34.9
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 8.0e-15 85.5 167 35.9
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.8e-14 84.3 269 33.5
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.0e-14 83.6 178 33.7
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.0e-13 80.9 217 31.8
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.3e-12 78.2 151 38.4
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.2e-12 77.4 128 39.8
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 5.9e-10 69.3 237 28.3
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.0e-09 67.0 104 44.2
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.9e-08 64.3 167 31.7
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.3e-08 63.2 63 52.4
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 7.3e-08 62.4 95 35.8
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.3e-06 57.4 153 30.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 4.0e-06 56.6 112 32.1


User provided reference genes

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