Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 9.9e-127 456.8 238 100.0
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 3.1e-120 435.3 238 95.0
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 1.9e-69 266.5 219 65.3
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 1.4e-67 260.4 232 64.2
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 5.2e-67 258.5 218 63.3
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 4.9e-65 251.9 247 59.9
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 6.3e-65 251.5 182 69.2
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 2.4e-64 249.6 213 60.1
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 7.0e-64 248.1 216 62.0
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 1.6e-63 246.9 247 55.5
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 2.3e-62 243.0 220 58.6
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 5.0e-62 241.9 242 56.2
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.5e-61 240.4 245 56.7
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 2.5e-61 239.6 228 57.0
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 3.3e-61 239.2 224 59.4
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 5.6e-61 238.4 239 57.3
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 9.5e-61 237.7 219 59.4
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 2.1e-60 236.5 222 56.8
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 2.1e-60 236.5 240 56.2
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.8e-60 236.1 241 56.8
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 2.8e-60 236.1 234 55.1
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 3.6e-60 235.7 173 68.8
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 3.6e-60 235.7 196 63.3
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.0e-59 234.2 200 63.0
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.0e-59 234.2 200 62.5
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 1.0e-59 234.2 175 66.9
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 3.1e-59 232.6 237 54.9
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 5.2e-59 231.9 238 54.2
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 6.8e-59 231.5 240 57.1
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 8.9e-59 231.1 211 58.3
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 8.9e-59 231.1 200 61.5
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 1.2e-58 230.7 227 55.9
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.2e-58 230.7 224 58.5
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 1.2e-58 230.7 237 53.6
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.2e-58 230.7 197 60.4
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 1.5e-58 230.3 229 54.6
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 1.5e-58 230.3 197 59.9
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 2.0e-58 229.9 216 58.8
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 2.6e-58 229.6 228 55.3
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 2.6e-58 229.6 225 53.8
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 5.8e-58 228.4 235 54.9
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.9e-57 226.1 238 52.1
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 2.9e-57 226.1 246 53.3
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 4.9e-57 225.3 238 52.1
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 4.9e-57 225.3 238 52.1
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 1.4e-56 223.8 212 55.2
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 5.4e-56 221.9 238 51.7
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 9.2e-56 221.1 215 55.8
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.2e-55 220.7 217 56.7
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 1.6e-55 220.3 213 55.4
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 2.0e-55 219.9 292 46.6
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 2.0e-55 219.9 239 55.2
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 2.7e-55 219.5 247 50.2
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 3.5e-55 219.2 211 56.4
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 3.5e-55 219.2 221 56.6
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 4.6e-55 218.8 209 55.5
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 6.0e-55 218.4 209 56.0
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 1.3e-54 217.2 178 65.2
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.7e-54 216.9 195 62.1
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 3.9e-54 215.7 192 57.3
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 8.6e-54 214.5 211 55.5
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.1e-53 214.2 239 53.1
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 1.9e-53 213.4 239 52.3
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.9e-53 213.4 210 55.7
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 1.9e-53 213.4 229 52.0
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 3.6e-52 209.1 219 52.5
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 4.7e-52 208.8 220 52.3
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 6.2e-52 208.4 220 52.3
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 1.4e-51 207.2 208 53.4
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 2.3e-51 206.5 197 56.3
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 6.8e-51 204.9 219 52.1
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 6.8e-51 204.9 219 52.1
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 6.8e-51 204.9 219 52.1
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 6.8e-51 204.9 242 49.6
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.2e-50 204.1 192 55.7
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 2.0e-50 203.4 220 54.1
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 2.0e-50 203.4 207 54.1
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 4.4e-50 202.2 219 53.0
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 1.3e-49 200.7 238 48.3
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 1.3e-49 200.7 207 53.1
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 5.4e-48 195.3 154 64.9
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 4.6e-47 192.2 242 49.2
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 1.7e-46 190.3 218 49.5
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 3.9e-46 189.1 177 54.8
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 8.6e-46 188.0 162 60.5
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 1.1e-45 187.6 195 54.9
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 1.4e-43 180.6 165 56.4
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 9.9e-42 174.5 135 67.4
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.3e-41 174.1 140 67.1
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 2.9e-41 172.9 200 51.0
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 8.3e-41 171.4 207 45.9
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 2.7e-39 166.4 195 47.2
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 4.3e-37 159.1 171 49.1
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 9.5e-37 157.9 136 59.6
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 8.1e-36 154.8 148 51.4
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 8.4e-33 144.8 335 34.9
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 3.9e-30 136.0 104 69.2
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 3.9e-30 136.0 104 69.2
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 6.4e-25 118.6 146 42.5
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 1.9e-24 117.1 104 58.7
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 9.3e-16 88.2 177 31.1
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.2e-15 87.8 64 70.3
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 8.4e-09 65.1 142 29.6
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 2.5e-08 63.5 47 68.1
Glyma.04G055801 Glycine max HOM05D007323 ORTHO05D009238 1.0e-06 58.2 60 58.3
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 1.3e-06 57.8 60 46.7


User provided reference genes

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