Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO421G0342 Papaver somniferum HOM05D003960 ORTHO05D004297 1.6e-74 282.7 148 100.0
PSO104G0019 Papaver somniferum HOM05D003960 ORTHO05D004297 1.7e-44 183.0 116 85.3
DCAR_001242 Daucus carota HOM05D003960 ORTHO05D004297 2.0e-24 116.3 128 53.1
Peaxi162Scf00486g00012 Petunia axillaris HOM05D003960 ORTHO05D004297 2.2e-23 112.8 107 58.9
Aqoxy7G04097 Aquilegia oxysepala HOM05D003960 ORTHO05D004297 1.4e-22 110.2 128 53.1
Sopen02g026730 Solanum pennellii HOM05D003960 ORTHO05D004297 1.4e-22 110.2 125 49.6
Solyc02g082080.1 Solanum lycopersicum HOM05D003960 ORTHO05D004297 1.9e-22 109.8 125 49.6
PGSC0003DMG400013653 Solanum tuberosum HOM05D003960 ORTHO05D004297 3.2e-22 109.0 125 49.6
TAR667G0002 Trochodendron aralioides HOM05D003960 ORTHO05D004297 1.2e-21 107.1 103 53.4
Potri.006G140700 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.6e-21 106.7 105 58.1
Cfa015757 Carpinus fangiana HOM05D003960 ORTHO05D004297 3.5e-21 105.5 105 51.4
Oeu018026.1 Olea europaea HOM05D003960 ORTHO05D004297 3.5e-21 105.5 128 48.4
HanXRQChr03g0067151 Helianthus annuus HOM05D003960 ORTHO05D004297 4.6e-21 105.1 113 53.1
THA.LOC104810995 Tarenaya hassleriana HOM05D003960 ORTHO05D004297 4.6e-21 105.1 103 57.3
TWI63G0819 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 4.6e-21 105.1 103 57.3
Lsat_1_v5_gn_7_58180 Lactuca sativa HOM05D003960 ORTHO05D004297 6.0e-21 104.8 124 49.2
Oeu024207.1 Olea europaea HOM05D003960 ORTHO05D004297 6.0e-21 104.8 133 53.4
Nn8g38616 Nelumbo nucifera HOM05D003960 ORTHO05D004297 7.8e-21 104.4 105 57.1
Manes.03G041100 Manihot esculenta HOM05D003960 ORTHO05D004297 1.0e-20 104.0 104 58.7
GSVIVG01015065001 Vitis vinifera HOM05D003960 ORTHO05D004297 1.0e-20 104.0 138 47.8
CAN.G65.51 Capsicum annuum HOM05D003960 ORTHO05D004297 1.7e-20 103.2 112 55.4
CiPaw.16G067200 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.3e-20 102.8 105 55.2
Gorai.010G089200 Gossypium raimondii HOM05D003960 ORTHO05D004297 3.0e-20 102.4 105 55.2
Gohir.D06G076200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.9e-20 102.1 105 54.3
Ciclev10009830m.g Citrus clementina HOM05D003960 ORTHO05D004297 5.1e-20 101.7 104 53.8
Nitab4.5_0009849g0010 Nicotiana tabacum HOM05D003960 ORTHO05D004297 5.1e-20 101.7 105 56.2
CANSAT25G0735 Cannabis sativa HOM05D003960 ORTHO05D004297 6.6e-20 101.3 111 58.6
TWI34G1946 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 6.6e-20 101.3 107 53.3
TAR624G1083 Trochodendron aralioides HOM05D003960 ORTHO05D004297 6.6e-20 101.3 105 56.2
HPP92_016237 Vanilla planifolia HOM05D003960 ORTHO05D004297 6.6e-20 101.3 103 52.4
MSTRG.1711 Avicennia marina HOM05D003960 ORTHO05D004297 8.6e-20 100.9 132 47.7
Migut.A00060 Erythranthe guttata HOM05D003960 ORTHO05D004297 1.1e-19 100.5 123 49.6
Gohir.A06G077200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.1e-19 100.5 105 54.3
Sabra06G0110000 Salix brachista HOM05D003960 ORTHO05D004297 1.1e-19 100.5 99 56.6
SGA_v2.0_scaffold169G38715 Striga asiatica HOM05D003960 ORTHO05D004297 1.1e-19 100.5 120 54.2
HanXRQChr05g0136461 Helianthus annuus HOM05D003960 ORTHO05D004297 1.5e-19 100.1 108 49.1
MELO3C011494.2 Cucumis melo HOM05D003960 ORTHO05D004297 1.9e-19 99.8 129 49.6
Nn2g15194 Nelumbo nucifera HOM05D003960 ORTHO05D004297 1.9e-19 99.8 133 45.9
CsaV3_6G031870 Cucumis sativus L. HOM05D003960 ORTHO05D004297 3.3e-19 99.0 129 48.8
PSO135G0474 Papaver somniferum HOM05D003960 ORTHO05D004297 3.3e-19 99.0 121 47.9
PSO724G1087 Papaver somniferum HOM05D003960 ORTHO05D004297 4.3e-19 98.6 121 45.5
COL.COLO4_18085 Corchorus olitorius HOM05D003960 ORTHO05D004297 5.6e-19 98.2 105 52.4
Prupe.1G402400 Prunus persica HOM05D003960 ORTHO05D004297 7.3e-19 97.8 107 51.4
Thecc.09G075400 Theobroma cacao HOM05D003960 ORTHO05D004297 7.3e-19 97.8 105 54.3
Atru.chr7.1719 Acer truncatum HOM05D003960 ORTHO05D004297 9.5e-19 97.4 110 52.7
Sed0008240 Sechium edule HOM05D003960 ORTHO05D004297 9.5e-19 97.4 129 49.6
Cc08_g01000 Coffea canephora HOM05D003960 ORTHO05D004297 1.2e-18 97.1 115 51.3
MBI19_g09927_MAGBIO Magnolia biondii HOM05D003960 ORTHO05D004297 1.2e-18 97.1 89 58.4
Ca_13094_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.6e-18 96.7 104 52.9
FvH4_2g30830 Fragaria vesca HOM05D003960 ORTHO05D004297 1.6e-18 96.7 125 46.4
FAN24G1040 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.6e-18 96.7 125 46.4
MD15G1048000 Malus domestica HOM05D003960 ORTHO05D004297 1.6e-18 96.7 131 46.6
Duzib187G1941 Durio zibethinus HOM05D003960 ORTHO05D004297 2.1e-18 96.3 105 54.3
Zm00001eb100190 Zea mays HOM05D003960 ORTHO05D004297 2.1e-18 96.3 105 53.3
BcaC04g19455 Brassica carinata HOM05D003960 ORTHO05D004297 2.8e-18 95.9 114 49.1
Lsat_1_v5_gn_8_70441 Lactuca sativa HOM05D003960 ORTHO05D004297 2.8e-18 95.9 103 48.5
Potri.006G219200 Populus trichocarpa HOM05D003960 ORTHO05D004297 2.8e-18 95.9 122 49.2
MSTRG.25994 Avicennia marina HOM05D003960 ORTHO05D004297 3.6e-18 95.5 123 46.3
Dinv42402 Davidia involucrata HOM05D003960 ORTHO05D004297 3.6e-18 95.5 101 55.4
TPR.G38913 Trifolium pratense HOM05D003960 ORTHO05D004297 3.6e-18 95.5 105 49.5
C09p55580 Brassica napus HOM05D003960 ORTHO05D004297 4.7e-18 95.1 114 48.2
BolC9t58421H Brassica oleracea HOM05D003960 ORTHO05D004297 4.7e-18 95.1 114 48.2
unitig_32.g11516 Utricularia gibba HOM05D003960 ORTHO05D004297 4.7e-18 95.1 104 53.8
BcaB08g36516 Brassica carinata HOM05D003960 ORTHO05D004297 6.2e-18 94.7 114 49.1
Duzib150G0920 Durio zibethinus HOM05D003960 ORTHO05D004297 6.2e-18 94.7 105 52.4
FAN15G2682 Fragaria x ananassa HOM05D003960 ORTHO05D004297 6.2e-18 94.7 125 46.4
Gohir.A13G190100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 6.2e-18 94.7 103 54.4
FAN20G3158 Fragaria x ananassa HOM05D003960 ORTHO05D004297 8.1e-18 94.4 125 46.4
ECA236G3206 Erigeron canadensis HOM05D003960 ORTHO05D004297 1.1e-17 94.0 101 48.5
Sabra06G0169100 Salix brachista HOM05D003960 ORTHO05D004297 1.1e-17 94.0 126 47.6
TWI32G1339 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 1.1e-17 94.0 108 50.9
A10p19370 Brassica napus HOM05D003960 ORTHO05D004297 1.4e-17 93.6 114 48.2
BraA10t44014Z Brassica rapa HOM05D003960 ORTHO05D004297 1.4e-17 93.6 114 48.2
Gohir.D13G196345 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.4e-17 93.6 103 50.5
SGA_v2.0_scaffold64G21904 Striga asiatica HOM05D003960 ORTHO05D004297 1.4e-17 93.6 105 51.4
Aa31LG1G14040 Aethionema arabicum HOM05D003960 ORTHO05D004297 1.8e-17 93.2 105 51.4
FAN27G1345 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.8e-17 93.2 125 46.4
Glyma.17G219400 Glycine max HOM05D003960 ORTHO05D004297 1.8e-17 93.2 108 49.1
BcaB05g22823 Brassica carinata HOM05D003960 ORTHO05D004297 3.1e-17 92.4 105 50.5
BcaB05g22824 Brassica carinata HOM05D003960 ORTHO05D004297 3.1e-17 92.4 105 50.5
Hma1.2p1_0179F.1_g079470 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 3.1e-17 92.4 110 53.6
MD08G1044900 Malus domestica HOM05D003960 ORTHO05D004297 3.1e-17 92.4 129 44.2
A02p06410 Brassica napus HOM05D003960 ORTHO05D004297 4.0e-17 92.0 105 51.4
BraA02t05586Z Brassica rapa HOM05D003960 ORTHO05D004297 4.0e-17 92.0 105 51.4
Gorai.013G223700 Gossypium raimondii HOM05D003960 ORTHO05D004297 4.0e-17 92.0 103 51.5
ClCG08G009750 Citrullus lanatus HOM05D003960 ORTHO05D004297 5.2e-17 91.7 129 47.3
MD08G1045600 Malus domestica HOM05D003960 ORTHO05D004297 5.2e-17 91.7 129 44.2
Medtr1g015000 Medicago truncatula HOM05D003960 ORTHO05D004297 5.2e-17 91.7 104 50.0
vmacro04769 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 5.2e-17 91.7 108 51.9
VMungo1309G2154 Vigna mungo HOM05D003960 ORTHO05D004297 5.2e-17 91.7 107 51.4
Glyma.14G107100 Glycine max HOM05D003960 ORTHO05D004297 8.9e-17 90.9 121 44.6
Carub.0006s1899 Capsella rubella HOM05D003960 ORTHO05D004297 1.2e-16 90.5 108 53.7
SalBow4G1627 Salvia bowleyana HOM05D003960 ORTHO05D004297 1.2e-16 90.5 109 49.5
Glyma.06G057400 Glycine max HOM05D003960 ORTHO05D004297 1.5e-16 90.1 107 49.5
Manes.16G086700 Manihot esculenta HOM05D003960 ORTHO05D004297 1.5e-16 90.1 99 50.5
CARHR192160 Cardamine hirsuta HOM05D003960 ORTHO05D004297 2.0e-16 89.7 106 49.1
Thhalv10015467m.g Eutrema salsugineum HOM05D003960 ORTHO05D004297 2.0e-16 89.7 105 49.5
Medtr3g105330 Medicago truncatula HOM05D003960 ORTHO05D004297 2.0e-16 89.7 129 43.4
Psat6g023040 Pisum sativum HOM05D003960 ORTHO05D004297 2.0e-16 89.7 104 50.0
Sp6g23830 Schrenkiella parvula HOM05D003960 ORTHO05D004297 2.0e-16 89.7 104 51.0
Glyma.04G057000 Glycine max HOM05D003960 ORTHO05D004297 2.6e-16 89.4 107 50.5
Psat5g033920 Pisum sativum HOM05D003960 ORTHO05D004297 2.6e-16 89.4 129 45.0
PGR142G3331 Punica granatum HOM05D003960 ORTHO05D004297 2.6e-16 89.4 117 43.6
Atru.chr7.1831 Acer truncatum HOM05D003960 ORTHO05D004297 3.4e-16 89.0 129 41.1
BcaC03g13784 Brassica carinata HOM05D003960 ORTHO05D004297 3.4e-16 89.0 103 50.5
C03p11710 Brassica napus HOM05D003960 ORTHO05D004297 3.4e-16 89.0 107 51.4
BolC3t13642H Brassica oleracea HOM05D003960 ORTHO05D004297 3.4e-16 89.0 107 51.4
Lalb_Chr23g0268031 Lupinus albus HOM05D003960 ORTHO05D004297 3.4e-16 89.0 116 44.8
Zm00001eb314090 Zea mays HOM05D003960 ORTHO05D004297 3.4e-16 89.0 110 48.2
VMungo1309G0846 Vigna mungo HOM05D003960 ORTHO05D004297 4.4e-16 88.6 104 50.0
AL6G32200 Arabidopsis lyrata HOM05D003960 ORTHO05D004297 5.8e-16 88.2 107 49.5
Eucgr.L03350 Eucalyptus grandis HOM05D003960 ORTHO05D004297 5.8e-16 88.2 66 65.2
Os09g0440700 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 5.8e-16 88.2 106 50.0
PGR044G2188 Punica granatum HOM05D003960 ORTHO05D004297 7.5e-16 87.8 121 45.5
AT5G20650 Arabidopsis thaliana HOM05D003960 ORTHO05D004297 9.9e-16 87.4 108 49.1
RcHm_v2.0_Chr6g0312031 Rosa chinensis HOM05D003960 ORTHO05D004297 9.9e-16 87.4 129 41.1
Sc06g0000100 Simmondsia chinensis HOM05D003960 ORTHO05D004297 1.7e-15 86.7 103 48.5
vmacro17132 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 2.2e-15 86.3 97 48.5
CiPaw.15G090800 Carya illinoinensis HOM05D003960 ORTHO05D004297 3.7e-15 85.5 130 40.8
Phvul.009G083400 Phaseolus vulgaris HOM05D003960 ORTHO05D004297 3.7e-15 85.5 107 48.6
Lj1g0025356 Lotus japonicus HOM05D003960 ORTHO05D004297 6.4e-15 84.7 129 42.6
Gohir.A13G188100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.1e-14 84.0 93 48.4
Gohir.D13G195000 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.9e-14 83.2 93 47.3
Gorai.013G221100 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.9e-14 83.2 93 47.3
HanXRQChr13g0407981 Helianthus annuus HOM05D003960 ORTHO05D004297 1.9e-14 83.2 60 66.7
Lj7P209T18 Lonicera japonica HOM05D003960 ORTHO05D004297 1.9e-14 83.2 108 51.9
CiPaw.05G156700 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.4e-14 82.8 130 40.0
CiPaw.05G157200 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.4e-14 82.8 130 40.0
Ca_15825_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 2.4e-14 82.8 132 43.9
Ca_28263_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 2.4e-14 82.8 132 43.9
Duzib187G0159 Durio zibethinus HOM05D003960 ORTHO05D004297 2.4e-14 82.8 98 43.9
ATR0598G332 Amborella trichopoda HOM05D003960 ORTHO05D004297 3.2e-14 82.4 106 49.1
TPR.G3570 Trifolium pratense HOM05D003960 ORTHO05D004297 3.2e-14 82.4 132 41.7
MSTRG.14089 Avicennia marina HOM05D003960 ORTHO05D004297 4.1e-14 82.0 128 43.0
CSS0013785 Camellia sinensis var. sinensis HOM05D003960 ORTHO05D004297 4.1e-14 82.0 65 61.5
Duzib150G1216 Durio zibethinus HOM05D003960 ORTHO05D004297 4.1e-14 82.0 98 48.0
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 4.1e-14 82.0 128 43.0
SEGI_35471 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 4.1e-14 82.0 98 45.9
Eucgr.K01930 Eucalyptus grandis HOM05D003960 ORTHO05D004297 5.4e-14 81.6 81 53.1
RhsimUnG0073900 Rhododendron simsii HOM05D003960 ORTHO05D004297 5.4e-14 81.6 107 47.7
Thecc.09G065300 Theobroma cacao HOM05D003960 ORTHO05D004297 5.4e-14 81.6 98 44.9
CANSAT56G3391 Cannabis sativa HOM05D003960 ORTHO05D004297 7.1e-14 81.3 110 44.5
AUR62028262 Chenopodium quinoa HOM05D003960 ORTHO05D004297 7.1e-14 81.3 116 45.7
COL.COLO4_21157 Corchorus olitorius HOM05D003960 ORTHO05D004297 9.2e-14 80.9 98 44.9
Eucgr.J01772 Eucalyptus grandis HOM05D003960 ORTHO05D004297 9.2e-14 80.9 110 43.6
Gorai.001G019400 Gossypium raimondii HOM05D003960 ORTHO05D004297 2.1e-13 79.7 94 46.8
Eucgr.B00068 Eucalyptus grandis HOM05D003960 ORTHO05D004297 2.7e-13 79.3 103 43.7
AUR62025257 Chenopodium quinoa HOM05D003960 ORTHO05D004297 4.6e-13 78.6 103 46.6
Gohir.A07G018900 Gossypium hirsutum HOM05D003960 ORTHO05D004297 7.8e-13 77.8 94 46.8
Gohir.D07G018700 Gossypium hirsutum HOM05D003960 ORTHO05D004297 7.8e-13 77.8 94 45.7
Lj5g0010758 Lotus japonicus HOM05D003960 ORTHO05D004297 1.0e-12 77.4 100 49.0
Cfa002978 Carpinus fangiana HOM05D003960 ORTHO05D004297 1.7e-12 76.6 89 48.3
BraA03t10329Z Brassica rapa HOM05D003960 ORTHO05D004297 5.1e-12 75.1 86 52.3
SHI27998 Sapria himalayana HOM05D003960 ORTHO05D004297 1.1e-11 73.9 99 45.5
QL11p001038 Quercus lobata HOM05D003960 ORTHO05D004297 1.5e-11 73.6 107 44.9
Os08g0455900 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 3.3e-11 72.4 73 52.1
CiPaw.03G205100 Carya illinoinensis HOM05D003960 ORTHO05D004297 7.3e-11 71.2 105 45.7
Zm00001eb068890 Zea mays HOM05D000032 ORTHO05D004297 3.6e-10 68.9 145 37.2
Mapoly0011s0109 Marchantia polymorpha HOM05D003960 ORTHO05D004297 1.8e-09 66.6 125 36.0
SMO174G0135 Selaginella moellendorffii HOM05D003960 ORTHO05D004297 3.4e-08 62.4 81 50.6
SEGI_26542 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 3.4e-08 62.4 60 50.0
Nitab4.5_0003159g0080 Nicotiana tabacum HOM05D003960 ORTHO05D004297 7.6e-08 61.2 77 53.2
Pp3c27_4780 Physcomitrium patens HOM05D003960 ORTHO05D004297 1.7e-07 60.1 58 60.3
Rhsim08G0237600 Rhododendron simsii HOM05D000933 ORTHO05D000820 3.8e-07 58.9 40 70.0
AagrBONN_evm.TU.Sc2ySwM_228.672 Anthoceros agrestis HOM05D003960 ORTHO05D004297 4.9e-07 58.5 76 39.5
Zm00001eb327100 Zea mays HOM05D003960 ORTHO05D004297 1.9e-06 56.6 41 63.4
Pp3c7_1360 Physcomitrium patens HOM05D003960 ORTHO05D004297 3.2e-06 55.8 48 58.3


User provided reference genes

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