Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.5e-311 1072.0 542 100.0
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 5.7e-303 1043.5 542 97.2
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.5e-234 816.2 547 77.0
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 5.6e-234 814.3 530 78.7
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 8.9e-232 807.0 543 77.2
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 9.2e-229 797.0 543 75.3
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 2.1e-228 795.8 551 75.7
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.0e-227 793.5 527 76.5
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 3.9e-227 791.6 554 74.5
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 5.1e-227 791.2 529 76.9
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 2.5e-226 788.9 537 75.8
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 5.6e-226 787.7 527 76.1
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 7.3e-226 787.3 550 73.5
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 2.1e-225 785.8 547 75.5
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.4e-224 782.3 534 74.3
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 4.0e-224 781.6 531 74.0
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 8.9e-224 780.4 531 76.1
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.8e-223 777.7 526 74.9
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 7.6e-223 777.3 533 74.7
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.3e-222 776.5 527 75.7
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 3.8e-222 775.0 531 75.1
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 3.8e-222 775.0 544 74.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 6.4e-222 774.2 534 75.7
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 8.4e-222 773.9 603 68.2
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 8.4e-222 773.9 535 75.5
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 5.4e-221 771.2 528 73.9
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.2e-220 770.0 532 73.9
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.7e-220 768.8 528 74.2
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.6e-220 768.1 531 73.1
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 4.6e-220 768.1 533 74.9
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 6.0e-220 767.7 538 72.5
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.0e-219 766.9 528 73.9
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 1.7e-219 766.1 528 73.9
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.1e-218 763.5 529 73.5
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.1e-218 763.5 531 73.4
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.9e-218 762.7 531 72.7
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.5e-218 762.3 525 75.0
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 4.3e-218 761.5 527 73.4
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 5.6e-218 761.1 534 73.2
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 9.6e-218 760.4 532 73.7
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.8e-217 758.8 532 72.7
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.8e-217 758.8 530 74.3
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.8e-217 758.8 528 72.9
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.8e-217 758.8 530 73.4
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 2.8e-217 758.8 534 72.8
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.6e-217 758.4 543 72.0
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 3.6e-217 758.4 547 71.5
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 6.2e-217 757.7 525 72.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.0e-216 755.0 545 71.7
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 5.3e-216 754.6 535 70.8
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.2e-215 753.4 526 72.4
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 2.0e-215 752.7 529 72.0
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 2.0e-215 752.7 529 72.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.0e-215 752.7 529 71.8
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 2.0e-215 752.7 528 71.8
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.0e-215 752.7 536 73.5
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 1.7e-214 749.6 529 71.8
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 3.8e-214 748.4 528 73.5
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 1.1e-213 746.9 536 72.0
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.4e-213 746.5 531 70.6
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 3.2e-213 745.3 523 73.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 4.2e-213 745.0 529 73.5
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 7.1e-213 744.2 565 68.8
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 1.2e-212 743.4 538 70.1
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.6e-212 743.0 537 70.2
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.5e-212 741.9 529 73.0
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.1e-210 736.9 530 72.6
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.1e-210 736.9 531 70.2
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.6e-210 734.6 525 71.8
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 9.6e-210 733.8 503 74.2
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.6e-209 733.0 543 71.3
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 4.0e-208 728.4 531 69.5
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.8e-207 724.5 527 70.8
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 5.8e-207 724.5 555 68.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 8.4e-206 720.7 520 71.0
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 2.7e-204 715.7 537 67.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 6.0e-204 714.5 495 75.4
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.3e-203 713.4 527 70.0
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.3e-203 712.6 533 69.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.3e-202 708.8 519 69.7
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.8e-201 705.7 535 68.4
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 3.7e-201 705.3 524 69.3
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.1e-200 702.2 481 74.0
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.2e-199 700.3 515 69.5
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.6e-199 699.1 545 66.1
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.6e-199 697.6 491 73.7
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 8.4e-198 694.1 554 66.1
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.6e-196 689.9 539 67.0
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 6.7e-195 684.5 497 69.8
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.7e-194 681.4 488 73.6
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.3e-193 680.2 533 65.7
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 6.9e-192 674.5 545 65.9
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 6.9e-184 647.9 603 62.9
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.3e-179 632.9 537 62.9
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 7.4e-178 627.9 415 77.8
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 8.2e-177 624.4 551 61.7
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 2.5e-165 586.3 414 71.3
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.8e-163 580.1 514 61.9
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.7e-162 575.1 412 73.3
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.3e-125 452.6 545 48.8
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 7.5e-122 441.8 533 50.3
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.8e-115 420.6 545 43.9
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 3.1e-115 419.9 359 65.2
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 8.4e-113 411.8 547 43.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 2.4e-112 410.2 525 44.4
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.7e-110 404.1 296 69.9
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.7e-110 404.1 558 44.8
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.4e-107 394.4 281 73.0
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 9.9e-106 388.3 269 72.9
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.8e-105 386.3 284 70.8
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 3.5e-103 379.8 335 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.1e-101 374.8 547 39.5
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 3.8e-89 333.2 424 44.3
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.6e-76 291.2 176 79.0
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.8e-76 290.4 617 32.6
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.9e-75 285.8 320 54.7
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.7e-63 247.3 227 61.2
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.0e-54 218.8 158 71.5
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.3e-54 217.6 276 49.3
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 4.8e-52 209.9 152 69.1
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 2.5e-48 197.6 707 26.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-47 195.3 99 90.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.7e-47 194.1 174 57.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.2e-41 174.5 115 73.9
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.1e-39 167.9 118 69.5
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.6e-34 151.8 121 65.3
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 5.2e-30 136.7 798 22.2
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.5e-29 132.9 97 67.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.3e-25 122.1 83 74.7
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.3e-20 102.8 100 52.0
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.3e-17 95.5 103 51.5
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 4.3e-16 90.5 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 6.6e-09 66.6 149 32.9
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 5.6e-08 63.5 52 67.3
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 5.2e-06 57.0 191 29.3
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 8.9e-06 56.2 40 72.5


User provided reference genes

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