Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 2710.3 1429 100.0
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1679.1 1430 65.1
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1522.3 1430 59.9
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1505.0 1435 59.9
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1501.5 1423 59.8
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1499.2 1428 59.2
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1424.5 1435 55.9
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1387.5 1431 54.1
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1383.6 1448 55.6
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1381.7 1438 54.1
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1376.3 1435 54.8
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1365.5 1295 58.8
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1363.2 1448 55.2
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1349.3 1438 53.4
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1347.4 1443 54.3
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1338.9 1452 52.8
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1332.0 1443 53.6
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1326.6 1445 53.2
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1318.9 1421 53.6
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1304.3 1262 56.3
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1302.3 1431 53.0
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1298.5 1438 52.5
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1290.0 1439 51.9
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1287.7 1441 52.5
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1275.0 1452 51.4
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1260.4 1438 51.0
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1246.9 1436 49.7
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1245.7 1261 54.8
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1239.2 1433 50.6
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1238.0 1451 50.7
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1225.3 1250 54.8
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1223.8 1433 49.5
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1208.0 1431 49.3
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1206.0 1250 54.0
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1203.7 1251 54.9
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1201.8 1445 48.7
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1186.8 1459 48.1
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1186.0 1457 48.2
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1184.1 1461 47.7
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1147.1 1350 48.4
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1145.2 1395 48.5
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1137.5 1422 46.8
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1135.9 1395 48.5
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1135.2 1355 47.8
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1135.2 1446 46.8
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1124.8 1355 48.0
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1110.9 1450 45.5
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1102.4 1404 45.8
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1099.3 1340 47.2
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1095.1 1401 45.9
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 0.0e+00 1092.0 1434 46.8
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1090.5 1390 48.4
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1086.2 1469 44.2
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 9.7e-310 1067.4 1453 45.7
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 4.1e-300 1035.4 1117 52.4
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 5.3e-292 1008.4 1194 49.3
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 5.3e-292 1008.4 1154 50.6
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 9.1e-292 1007.7 1245 47.3
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 3.2e-289 999.2 1239 48.6
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 2.3e-287 993.0 1401 43.2
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 6.3e-285 984.9 1150 49.1
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 5.3e-284 981.9 1053 54.6
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 2.2e-277 959.9 1073 51.9
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.4e-276 956.4 1371 43.5
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.2e-267 927.5 864 59.6
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 1.4e-263 914.1 1437 41.4
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 4.0e-263 912.5 1058 51.0
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.1e-260 904.4 1060 50.3
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 2.8e-256 889.8 867 57.9
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.1e-233 814.7 1295 39.9
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.5e-201 707.2 703 54.8
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 6.7e-194 682.6 713 54.8
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 2.3e-186 657.5 979 42.2
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 4.3e-185 653.3 1441 34.4
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 4.1e-183 646.7 1493 33.0
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 5.3e-183 646.4 1342 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.9e-181 640.6 1413 34.0
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 1.3e-173 615.1 624 55.3
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 1.2e-163 582.0 920 41.5
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 3.3e-116 424.5 681 41.6
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 1.9e-103 382.1 1329 27.5
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.3e-91 342.8 483 42.9
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 7.9e-78 297.0 376 46.3
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 9.0e-74 283.5 331 50.8
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 4.5e-73 281.2 292 53.4
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 2.1e-62 245.7 274 52.9
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 4.7e-54 218.0 308 45.1
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 1.8e-45 189.5 254 46.5
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 5.4e-42 177.9 205 53.7
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.8e-29 136.3 120 64.2
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 4.1e-26 125.2 104 67.3
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 2.3e-24 119.4 307 32.9
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.5e-23 115.9 103 54.4
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 2.0e-20 106.3 153 47.1
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 4.3e-15 88.6 113 45.1
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 1.1e-13 84.0 93 53.8
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 7.1e-10 71.2 331 24.8


User provided reference genes

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