Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 8.1e-36 154.5 117 100.0
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 3.2e-24 115.9 62 98.4
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 7.1e-24 114.8 103 78.6
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 1.2e-23 114.0 61 98.4
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 1.6e-23 113.6 103 82.5
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 1.6e-23 113.6 61 96.7
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 3.5e-23 112.5 65 92.3
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 3.9e-22 109.0 106 73.6
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 8.7e-22 107.8 61 91.8
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 1.9e-21 106.7 103 78.6
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.9e-21 106.7 58 94.8
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 1.9e-21 106.7 103 81.6
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 3.3e-21 105.9 65 86.2
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.3e-21 105.9 61 90.2
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.3e-21 105.9 61 90.2
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 3.3e-21 105.9 59 93.2
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 5.6e-21 105.1 103 78.6
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 5.6e-21 105.1 61 90.2
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 5.6e-21 105.1 61 91.8
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 7.4e-21 104.8 61 90.2
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 7.4e-21 104.8 61 90.2
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 7.4e-21 104.8 61 88.5
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 7.4e-21 104.8 61 88.5
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 9.6e-21 104.4 61 90.2
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 1.6e-20 103.6 61 90.2
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 1.6e-20 103.6 102 59.8
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 2.1e-20 103.2 59 89.8
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 2.1e-20 103.2 61 86.9
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 2.8e-20 102.8 61 90.2
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 2.8e-20 102.8 61 86.9
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 2.8e-20 102.8 61 88.5
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 2.8e-20 102.8 61 88.5
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 3.7e-20 102.4 61 86.9
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.7e-20 102.4 61 88.5
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 4.8e-20 102.1 61 86.9
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 4.8e-20 102.1 61 86.9
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 4.8e-20 102.1 65 83.1
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 4.8e-20 102.1 61 90.2
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 4.8e-20 102.1 61 85.2
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 6.2e-20 101.7 59 88.1
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 6.2e-20 101.7 98 80.6
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 6.2e-20 101.7 61 88.5
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 8.2e-20 101.3 61 86.9
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 8.2e-20 101.3 65 83.1
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 1.1e-19 100.9 101 79.2
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 1.1e-19 100.9 59 88.1
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 1.1e-19 100.9 61 85.2
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 1.1e-19 100.9 61 85.2
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 1.1e-19 100.9 61 85.2
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 1.1e-19 100.9 59 86.4
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 1.4e-19 100.5 61 86.9
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 1.4e-19 100.5 65 81.5
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 1.8e-19 100.1 103 78.6
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 85.2
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 85.2
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 85.2
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 2.4e-19 99.8 60 85.0
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 2.4e-19 99.8 59 89.8
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 2.4e-19 99.8 65 81.5
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 2.4e-19 99.8 59 88.1
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 3.1e-19 99.4 65 76.9
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 3.1e-19 99.4 61 83.6
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 4.0e-19 99.0 62 79.0
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 5.3e-19 98.6 61 83.6
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 1.2e-18 97.4 59 84.7
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.2e-18 97.4 60 81.7
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 1.2e-18 97.4 61 82.0
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 2.6e-18 96.3 60 80.0
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 2.6e-18 96.3 59 84.7
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 3.4e-18 95.9 61 82.0
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 4.5e-18 95.5 59 83.1
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 4.5e-18 95.5 59 83.1
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 4.5e-18 95.5 59 83.1
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 4.5e-18 95.5 59 83.1
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 4.5e-18 95.5 59 84.7
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 5.8e-18 95.1 59 83.1
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 1.0e-17 94.4 54 90.7
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 83.1
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 2.9e-17 92.8 61 78.7
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 3.8e-17 92.4 52 92.3
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 4.9e-17 92.0 61 80.3
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 4.9e-17 92.0 62 75.8
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 3.2e-16 89.4 62 75.8
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 3.2e-16 89.4 64 71.9
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 5.5e-16 88.6 79 65.8
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 1.2e-15 87.4 66 74.2
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 4.6e-15 85.5 59 78.0
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 6.0e-15 85.1 51 84.3
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 1.3e-14 84.0 103 65.0
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 1.8e-14 83.6 51 82.4
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 2.3e-14 83.2 53 86.8
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 1.5e-13 80.5 55 74.5
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 1.3e-12 77.4 54 79.6
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 2.7e-07 59.7 32 90.6
FvH4_2g14440 Fragaria vesca HOM05D007682 ORTHO05D009690 4.6e-07 58.9 34 82.4


User provided reference genes

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