Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 1.7e-38 162.2 78 100.0
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 3.1e-37 157.9 77 97.4
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 4.1e-37 157.5 77 97.4
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 5.9e-36 153.7 77 92.2
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 8.5e-35 149.8 77 92.2
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 8.5e-35 149.8 77 89.6
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.9e-34 148.7 75 90.7
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 2.5e-34 148.3 77 92.2
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 3.2e-34 147.9 77 88.3
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.2e-34 147.5 77 89.6
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.2e-34 147.5 77 89.6
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.5e-34 147.1 77 88.3
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.2e-34 146.7 77 89.6
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 7.2e-34 146.7 77 88.3
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 9.4e-34 146.4 75 89.3
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 9.4e-34 146.4 77 87.0
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 9.4e-34 146.4 77 88.3
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.2e-33 146.0 77 87.0
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.2e-33 146.0 77 87.0
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.2e-33 146.0 77 89.6
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.2e-33 146.0 75 89.3
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.6e-33 145.6 77 88.3
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 87.0
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 87.0
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 88.3
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 87.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 88.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 2.7e-33 144.8 77 87.0
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.7e-33 144.8 77 85.7
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 2.7e-33 144.8 77 87.0
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 3.6e-33 144.4 77 87.0
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 3.6e-33 144.4 77 87.0
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 3.6e-33 144.4 77 85.7
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 4.7e-33 144.1 77 87.0
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 4.7e-33 144.1 77 87.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 4.7e-33 144.1 77 87.0
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 6.1e-33 143.7 77 84.4
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 8.0e-33 143.3 77 84.4
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 8.0e-33 143.3 75 88.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 8.0e-33 143.3 75 86.7
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 8.0e-33 143.3 77 84.4
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 8.0e-33 143.3 77 84.4
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 8.0e-33 143.3 77 85.7
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 1.0e-32 142.9 77 84.4
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 1.0e-32 142.9 77 85.7
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.0e-32 142.9 77 83.1
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.0e-32 142.9 77 83.1
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 87.0
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 1.8e-32 142.1 75 86.7
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.8e-32 142.1 77 83.1
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.8e-32 142.1 77 85.7
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.8e-32 142.1 77 85.7
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.8e-32 142.1 77 84.4
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 2.3e-32 141.7 77 84.4
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 2.3e-32 141.7 77 85.7
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 3.0e-32 141.4 77 84.4
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 3.0e-32 141.4 77 84.4
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 3.0e-32 141.4 77 84.4
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 3.0e-32 141.4 77 84.4
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 4.0e-32 141.0 77 81.8
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 5.2e-32 140.6 77 84.4
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 6.8e-32 140.2 77 87.0
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 8.8e-32 139.8 77 80.5
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.2e-31 139.4 74 85.1
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 83.1
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 2.0e-31 138.7 77 83.1
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.6e-31 138.3 77 81.8
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 3.4e-31 137.9 76 80.3
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 3.4e-31 137.9 77 81.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 4.4e-31 137.5 77 81.8
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 5.7e-31 137.1 82 79.3
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 5.7e-31 137.1 77 81.8
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.7e-31 137.1 77 85.7
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 5.7e-31 137.1 77 85.7
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 7.5e-31 136.7 75 84.0
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 7.5e-31 136.7 75 84.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 1.3e-30 136.0 75 84.0
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.7e-30 135.6 75 82.7
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 1.7e-30 135.6 75 82.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.2e-30 135.2 75 82.7
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.2e-30 135.2 91 72.5
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.8e-30 134.8 76 80.3
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 3.7e-30 134.4 75 81.3
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 4.8e-30 134.0 75 81.3
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 6.3e-30 133.7 75 81.3
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 6.3e-30 133.7 75 81.3
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 6.3e-30 133.7 75 81.3
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 8.3e-30 133.3 75 80.0
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 7.0e-29 130.2 77 76.6
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-28 129.4 75 78.7
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.6e-28 129.0 75 78.7
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.6e-28 129.0 75 78.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.6e-28 129.0 94 66.0
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.7e-28 128.3 75 77.3
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.7e-28 128.3 75 77.3
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.7e-28 128.3 75 77.3
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.9e-28 127.1 77 80.5
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.2e-27 125.2 112 57.1
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.5e-26 122.5 66 87.9
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 3.2e-26 121.3 66 87.9
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 7.2e-26 120.2 62 90.3
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-25 119.0 58 89.7
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 3.6e-25 117.9 66 83.3
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 6.1e-25 117.1 63 87.3
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.0e-25 116.7 68 85.3
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.0e-24 116.3 68 83.8
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.0e-24 116.3 66 80.3
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-24 115.2 63 85.7
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.0e-24 114.4 66 81.8
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.0e-24 114.4 64 85.9
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 8.8e-24 113.2 63 84.1
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.2e-23 112.8 74 67.6
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 9.8e-23 109.8 66 75.8
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.3e-22 109.4 64 78.1
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 4.9e-22 107.5 50 88.0
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.9e-22 107.5 62 80.6
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 6.3e-22 107.1 68 75.0
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 7.0e-21 103.6 62 82.3
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.7e-20 101.7 77 61.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 3.5e-20 101.3 63 81.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 3.8e-19 97.8 61 75.4
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.9e-18 95.5 51 78.4
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.9e-18 95.5 51 78.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 4.2e-18 94.4 50 76.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.2e-17 92.8 49 75.5
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-17 92.8 49 75.5
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.2e-17 92.8 49 75.5
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.0e-15 85.5 49 81.6
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 7.5e-15 83.6 66 59.1
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.5e-12 74.7 60 65.0
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.7e-11 72.4 39 92.3
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 2.3e-11 72.0 35 85.7
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 2.9e-11 71.6 36 77.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.2e-09 66.2 38 68.4
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 2.3e-08 62.0 71 36.6
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.2e-07 59.7 39 61.5
Cre16.g682587 Chlamydomonas reinhardtii HOM05D005881 ORTHO05D007298 7.5e-07 57.0 74 39.2


User provided reference genes

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