Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 9.5e-192 673.3 335 100.0
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 8.3e-188 660.2 333 97.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.7e-148 529.6 335 80.0
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 4.2e-147 525.0 338 79.3
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 3.0e-145 518.8 334 79.0
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 6.7e-145 517.7 329 79.3
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.9e-144 516.2 332 77.7
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.5e-144 515.8 328 79.3
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 2.5e-144 515.8 308 83.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 8.2e-143 510.8 331 75.8
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.1e-142 510.4 329 77.8
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.4e-142 509.2 327 76.8
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.4e-142 509.2 327 78.3
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.1e-142 508.4 345 76.2
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 9.0e-142 507.3 335 77.0
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.2e-141 506.9 330 77.0
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.5e-141 506.5 335 76.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 2.0e-141 506.1 336 75.9
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.5e-141 505.0 334 77.2
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.0e-140 503.8 345 76.2
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.0e-140 503.8 336 75.6
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.7e-140 503.1 327 75.8
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.7e-140 503.1 345 76.2
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 2.2e-140 502.7 335 75.8
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 2.9e-140 502.3 328 76.2
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 3.8e-140 501.9 302 80.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 5.0e-140 501.5 335 75.8
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 8.5e-140 500.7 327 75.2
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 8.5e-140 500.7 330 76.1
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 8.5e-140 500.7 331 76.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 8.5e-140 500.7 345 73.3
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 1.1e-139 500.4 327 76.8
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.9e-139 499.6 330 75.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.9e-139 499.6 306 78.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 3.2e-139 498.8 329 75.1
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 3.2e-139 498.8 336 74.4
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.2e-139 498.4 333 73.6
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 5.5e-139 498.0 327 76.5
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 5.5e-139 498.0 329 74.8
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 5.5e-139 498.0 354 70.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.2e-138 496.9 329 76.0
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.2e-138 496.9 332 75.3
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.2e-138 496.9 325 76.6
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.2e-138 496.9 335 74.3
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.6e-138 496.5 325 77.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.1e-138 496.1 327 74.9
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.1e-138 496.1 327 75.8
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.7e-138 495.7 329 76.0
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.6e-138 495.4 335 75.5
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 4.6e-138 495.0 327 74.6
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 4.6e-138 495.0 327 75.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 6.1e-138 494.6 328 75.0
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 6.1e-138 494.6 332 75.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 6.1e-138 494.6 330 73.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.0e-137 493.8 327 74.9
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.3e-137 493.4 302 80.5
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-137 493.0 327 76.1
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.3e-137 492.7 327 76.1
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 2.3e-137 492.7 332 74.7
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 3.0e-137 492.3 349 72.8
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.9e-137 491.9 338 73.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 3.9e-137 491.9 335 74.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 5.1e-137 491.5 328 74.7
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 6.7e-137 491.1 328 75.0
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 8.7e-137 490.7 332 75.0
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.1e-136 490.3 325 76.3
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.1e-136 490.3 335 73.4
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.5e-136 490.0 329 75.1
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.9e-136 489.6 333 73.3
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.5e-136 489.2 331 72.5
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 3.3e-136 488.8 326 74.5
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.6e-135 486.5 340 72.1
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.6e-135 486.5 340 72.1
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 2.2e-135 486.1 334 72.8
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.8e-135 485.7 328 73.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.8e-135 485.7 283 81.6
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.1e-134 483.8 322 76.1
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.8e-134 483.0 329 73.3
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.1e-134 482.3 320 76.6
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 3.1e-134 482.3 270 85.2
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 4.1e-134 481.9 369 66.4
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 6.9e-134 481.1 282 81.6
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.2e-133 480.3 333 72.1
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.5e-133 479.9 330 72.4
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 3.4e-133 478.8 288 80.2
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.7e-132 476.5 333 72.7
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.2e-132 476.1 292 79.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.2e-132 476.1 329 73.3
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 8.5e-132 474.2 303 79.2
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 3.2e-131 472.2 406 62.1
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 3.2e-131 472.2 326 71.5
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 4.2e-131 471.9 336 70.8
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.2e-130 470.3 310 73.2
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.7e-130 469.2 337 72.1
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.6e-130 468.8 336 70.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 5.7e-128 461.5 312 76.0
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.2e-127 459.5 269 82.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.4e-126 456.1 308 71.4
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.6e-125 452.6 270 80.7
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.3e-124 450.3 328 70.1
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.3e-124 450.3 328 70.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.0e-124 448.4 335 69.6
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.1e-123 447.2 331 68.9
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 3.0e-121 439.1 244 86.9
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 6.7e-121 438.0 280 72.9
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 8.2e-119 431.0 268 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 5.3e-118 428.3 280 72.5
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.5e-115 418.3 355 64.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.6e-114 415.6 285 73.3
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 4.0e-113 412.1 321 68.2
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 9.7e-112 407.5 280 71.8
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.2e-111 406.4 287 74.6
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.7e-109 399.4 305 70.5
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.9e-107 393.3 325 65.5
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 7.5e-104 381.3 260 75.0
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.1e-102 377.5 260 72.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 3.0e-97 359.4 288 66.0
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.0e-97 359.0 265 69.8
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 5.7e-96 355.1 288 64.2
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 4.5e-93 345.5 226 75.7
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 3.4e-80 302.8 225 70.7
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.3e-76 290.0 222 68.0
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.7e-63 247.3 153 77.1
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.1e-62 244.6 139 82.7
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.6e-61 240.7 336 45.8
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.7e-60 237.3 139 83.5
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.0e-57 224.9 171 69.0
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 3.8e-55 219.5 130 79.2
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-49 201.1 106 83.0
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 9.0e-49 198.4 106 83.0
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.0e-48 197.2 148 70.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 6.9e-41 172.2 278 42.8
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 6.4e-39 165.6 129 61.2
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 4.6e-37 159.5 110 67.3
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 6.7e-36 155.6 305 34.8
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 4.5e-32 142.9 115 60.9
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 3.7e-26 123.2 298 33.2
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.4e-24 116.7 85 65.9
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.2e-22 110.2 84 60.7
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.1e-21 107.5 71 73.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 3.0e-20 103.6 95 57.9
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.4e-17 94.7 96 56.2
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.8e-17 94.4 97 56.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 2.4e-17 94.0 51 76.5
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 6.9e-17 92.4 73 58.9
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.0e-16 90.9 53 83.0
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 3.4e-16 90.1 51 78.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 4.5e-16 89.7 50 80.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 5.1e-12 76.3 37 86.5
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 7.7e-08 62.4 44 65.9
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 1.0e-07 62.0 49 63.3
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 9.4e-06 55.5 27 81.5


User provided reference genes

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