Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 2171.0 1143 100.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 2138.6 1143 96.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1527.3 1158 71.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1481.1 1085 72.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1480.3 1127 70.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1478.8 1149 69.4
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1458.0 1155 67.2
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1458.0 1149 67.9
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1452.2 1147 66.5
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1449.1 1184 67.0
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1447.2 1122 68.6
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1440.6 1121 66.1
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1429.8 1170 65.4
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1427.9 1123 67.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1136 66.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1412.5 1111 69.0
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1398.6 1009 71.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1398.6 1138 65.9
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1398.3 1149 66.2
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1395.6 1117 64.7
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1394.8 1147 67.2
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1392.5 1117 65.7
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1386.3 1105 67.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1385.5 1087 66.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1383.2 1139 65.9
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1382.9 1138 64.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1382.9 1124 64.7
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1379.8 1130 66.8
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1379.0 1121 67.4
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1377.5 1098 66.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1364.0 1123 65.2
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1357.0 1257 59.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1349.0 1110 65.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1342.4 1129 63.1
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1335.1 1178 60.8
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1330.9 1124 62.6
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1327.8 1106 63.3
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1326.6 1003 68.8
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1323.1 1144 60.9
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1318.9 1092 62.9
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1310.0 1132 63.3
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1308.9 1097 62.1
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1303.1 1032 64.1
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1139 62.6
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1298.9 1142 59.6
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1298.5 1128 62.3
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1296.6 1108 60.3
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1291.2 1097 61.7
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1066 61.1
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1290.0 1138 59.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1290.0 1105 59.5
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1285.0 1099 64.4
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1282.3 1040 65.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1279.6 1118 59.3
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1277.7 1082 60.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1276.5 1037 62.6
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1276.2 1037 62.9
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1276.2 1096 60.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1275.4 1088 64.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1275.4 1036 63.7
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1275.4 1121 61.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1130 61.1
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1274.2 1099 60.2
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1273.1 1041 65.0
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1272.7 1148 61.9
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1271.9 1072 62.2
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1088 64.5
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1063 61.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1262.3 1146 59.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1261.5 1124 61.3
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1083 60.5
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1257.7 1136 62.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1256.5 1058 60.9
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1255.0 1150 59.8
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1252.3 1152 58.7
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1251.1 1068 63.7
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1250.0 1099 59.1
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1244.2 1065 59.8
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1242.6 1081 63.9
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1067 59.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1234.2 1130 59.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1233.8 1077 59.2
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1233.4 1068 59.3
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1232.2 1065 59.2
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1226.1 1064 60.1
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1225.3 1079 60.5
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1218.8 1088 58.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1216.8 1138 56.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1213.0 1114 58.3
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1212.6 1092 61.8
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1209.9 1073 60.0
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1184.1 1049 58.8
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1182.5 1111 55.7
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1180.2 1351 49.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1172.1 981 61.4
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1165.6 1034 59.7
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1155.2 1079 55.5
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1154.4 1093 55.1
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1148.7 925 64.3
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1115.9 1081 57.4
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1103.6 1105 56.2
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1095.5 889 67.9
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1094.7 861 63.2
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 3.4e-305 1052.0 1132 53.5
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 4.1e-303 1045.0 774 68.6
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 2.9e-293 1012.3 1098 52.6
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 6.6e-293 1011.1 1013 52.2
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.5e-292 1009.2 955 55.6
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.6e-286 989.9 677 72.4
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 2.8e-275 952.6 994 50.4
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.9e-268 929.9 957 49.3
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.5e-262 909.1 802 59.6
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 5.3e-242 842.0 993 45.8
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 4.2e-239 832.4 688 66.6
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-211 740.7 591 64.3
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.0e-201 707.2 544 67.5
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.0e-201 707.2 544 67.5
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 5.9e-201 705.7 1037 40.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.4e-138 497.7 403 65.5
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.7e-86 325.5 402 47.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.9e-82 312.0 165 95.8
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.3e-58 231.5 594 28.8
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 8.9e-56 223.4 201 57.2
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.1e-49 202.2 206 53.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 5.8e-47 194.1 138 68.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 8.3e-46 190.3 216 50.0
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 4.3e-42 177.9 171 55.6
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.7e-38 166.0 623 24.6
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.2e-36 159.8 174 50.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 2.1e-36 159.1 389 29.6
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.3e-35 155.6 174 50.0
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.3e-27 129.0 127 54.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.8e-25 122.1 121 55.4
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.0e-20 104.4 106 46.2
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 3.3e-18 98.6 97 49.5
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 2.6e-15 89.0 257 26.5
PSO017G3399 Papaver somniferum HOM05D004682 ORTHO05D303068 3.2e-13 82.0 109 45.9
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.9e-10 72.8 71 53.5
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.7e-09 68.6 68 51.5
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.8e-09 68.2 79 50.6
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 4.0e-08 65.1 46 52.2
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.5e-07 63.2 80 47.5
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 4.5e-07 61.6 96 38.5
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.3e-06 60.1 39 66.7
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 6.5e-06 57.8 114 37.7
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 6.5e-06 57.8 72 44.4


User provided reference genes

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