Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.0e-99 366.7 182 100.0
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.0e-99 366.7 182 100.0
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 1.7e-94 349.4 182 93.4
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 92.9
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 92.9
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 93.4
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 93.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 92.3
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 92.9
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.9
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 91.2
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 92.3
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.3
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 90.7
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.8
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 90.7
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 7.9e-92 340.5 180 91.1
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 90.7
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 90.7
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 90.7
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 90.7
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 90.1
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 89.6
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 91.8
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 90.1
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.1
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 87.4
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.7
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.1
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 6.7e-91 337.4 179 92.2
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 89.0
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 89.6
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 90.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 89.0
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.5e-90 336.3 179 91.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 89.6
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 91.2
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 91.2
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 2.6e-90 335.5 181 89.0
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.3e-90 335.1 177 91.5
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 89.0
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 4.4e-90 334.7 182 89.0
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 87.4
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 89.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 9.7e-90 333.6 179 89.9
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 88.5
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.7e-89 332.8 178 90.4
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.7e-89 332.8 180 88.3
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 2.2e-89 332.4 182 87.4
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 2.8e-89 332.0 181 89.5
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.7e-89 331.6 176 90.3
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 4.8e-89 331.3 182 87.9
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 6.3e-89 330.9 176 90.9
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 8.2e-89 330.5 176 90.3
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.4e-88 329.7 178 90.4
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.8e-88 329.3 194 85.1
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.8e-88 329.3 172 94.2
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 5.3e-88 327.8 202 81.7
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 89.0
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 7.0e-88 327.4 178 89.3
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.2e-87 326.6 182 87.9
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 2.0e-87 325.9 182 87.4
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 2.6e-87 325.5 182 87.4
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.6e-87 325.5 173 91.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 4.5e-87 324.7 172 92.4
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 4.5e-87 324.7 176 90.3
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 7.7e-87 323.9 173 90.8
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 86.8
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 87.4
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 87.4
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 86.8
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 84.6
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.9e-85 319.3 178 87.6
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 3.2e-85 318.5 197 81.2
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 83.5
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 2.1e-84 315.8 177 86.4
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 85.2
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 4.7e-84 314.7 176 85.2
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.4e-83 313.2 182 82.4
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 3.0e-83 312.0 174 87.4
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.0e-83 311.6 173 87.9
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.1e-82 310.1 182 85.2
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.1e-82 310.1 174 86.8
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 1.5e-82 309.7 174 86.8
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 3.3e-82 308.5 174 85.6
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 3.3e-82 308.5 174 85.6
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 2.8e-81 305.4 178 84.8
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 6.3e-81 304.3 208 75.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 8.5e-78 293.9 182 82.4
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.5e-77 293.1 183 82.0
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.2e-77 290.8 182 79.1
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 4.0e-75 285.0 152 88.2
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 5.2e-75 284.6 149 89.9
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 5.2e-75 284.6 177 79.7
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 2.6e-74 282.3 151 92.1
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 3.4e-74 282.0 182 76.4
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.7e-73 279.6 155 86.5
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.2e-73 279.3 155 88.4
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.7e-73 278.5 155 88.4
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.0e-70 270.4 155 86.5
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 6.8e-67 257.7 181 75.1
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 7.5e-66 254.2 139 87.1
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 9.8e-66 253.8 184 73.9
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.2e-65 252.7 128 93.8
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 4.9e-65 251.5 130 92.3
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.5e-58 229.9 184 60.3
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 3.4e-58 228.8 125 84.8
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.8e-56 223.0 177 58.8
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.0e-54 217.2 185 57.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 5.0e-54 214.9 155 71.0
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 6.2e-52 208.0 105 95.2
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.0e-51 207.2 105 94.3
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-50 203.8 105 93.3
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 4.4e-50 201.8 105 92.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.9e-45 186.4 101 86.1
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.1e-44 183.0 100 88.0
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 3.6e-44 182.2 179 59.2
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.8e-43 179.9 154 63.6
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.9e-41 171.8 92 91.3
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 5.4e-40 168.3 92 88.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-39 166.4 86 91.9
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 3.3e-37 159.1 91 78.0
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.2e-34 150.6 127 59.8
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.9e-32 143.3 92 80.4
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.3e-30 136.3 87 75.9
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 2.8e-28 129.4 66 90.9
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 6.4e-25 118.2 77 77.9
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.5e-23 112.5 70 78.6
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-18 97.1 49 89.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 4.6e-15 85.5 182 31.3
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.0e-14 82.8 182 31.3
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 6.7e-14 81.6 182 31.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 8.7e-14 81.3 182 30.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-13 80.5 182 31.9
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.5e-13 79.7 182 30.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 7.4e-13 78.2 182 30.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 9.6e-13 77.8 185 28.6
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.8e-12 76.3 181 29.8
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 8.1e-12 74.7 52 63.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 29.7
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 8.1e-12 74.7 49 71.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.8e-11 73.6 182 30.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.8e-11 73.6 183 26.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.8e-11 73.6 187 31.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 28.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.1e-11 72.8 181 29.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.0e-11 72.4 182 28.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 29.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 28.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.5e-10 70.5 181 28.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.4e-10 69.3 182 28.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 4.5e-10 68.9 181 27.6
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 4.5e-10 68.9 182 27.5
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.8e-10 68.6 180 31.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 5.8e-10 68.6 198 25.8
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 5.8e-10 68.6 182 27.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.3e-09 67.4 159 28.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.9e-09 65.5 137 32.1
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.8e-06 57.0 133 30.1


User provided reference genes

Program Settings