Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G5105 Papaver somniferum HOM05D001991 ORTHO05D002030 1.7e-78 296.2 178 100.0
PSO063G3998 Papaver somniferum HOM05D001991 ORTHO05D002030 9.0e-32 141.0 126 62.7
PSO754G0066 Papaver somniferum HOM05D001991 ORTHO05D002030 9.0e-32 141.0 129 61.2
Lj6C814T13 Lonicera japonica HOM05D001991 ORTHO05D002030 5.0e-14 82.0 108 50.0
PGR102G1816 Punica granatum HOM05D001991 ORTHO05D002030 1.1e-13 80.9 132 43.9
COL.COLO4_23473 Corchorus olitorius HOM05D001991 ORTHO05D002030 2.5e-13 79.7 189 36.0
GSVIVG01000549001 Vitis vinifera HOM05D001991 ORTHO05D002030 2.5e-13 79.7 116 48.3
AT3G26400 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 3.2e-13 79.3 98 50.0
Lj3A1060G69 Lonicera japonica HOM05D001991 ORTHO05D002030 4.2e-13 79.0 166 37.3
Thecc.02G262800 Theobroma cacao HOM05D001991 ORTHO05D002030 4.2e-13 79.0 109 47.7
A06p42040 Brassica napus HOM05D001991 ORTHO05D002030 5.5e-13 78.6 118 44.9
BraA06t27121Z Brassica rapa HOM05D001991 ORTHO05D002030 5.5e-13 78.6 118 44.9
CARHR147420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 5.5e-13 78.6 91 52.7
Lalb_Chr13g0295851 Lupinus albus HOM05D001991 ORTHO05D002030 1.2e-12 77.4 76 52.6
BcaNung06887 Brassica carinata HOM05D001991 ORTHO05D002030 1.6e-12 77.0 115 45.2
C07p35440 Brassica napus HOM05D001991 ORTHO05D002030 1.6e-12 77.0 115 45.2
BolC7t44068H Brassica oleracea HOM05D001991 ORTHO05D002030 1.6e-12 77.0 115 45.2
Thhalv10007279m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 2.1e-12 76.6 115 43.5
QL03p057223 Quercus lobata HOM05D001991 ORTHO05D002030 2.1e-12 76.6 88 54.5
Duzib251G0379 Durio zibethinus HOM05D001991 ORTHO05D002030 2.7e-12 76.3 101 48.5
MD16G1099600 Malus domestica HOM05D001991 ORTHO05D002030 3.6e-12 75.9 112 45.5
PGR119G1839 Punica granatum HOM05D001991 ORTHO05D002030 3.6e-12 75.9 101 44.6
CSS0027226 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 4.7e-12 75.5 104 44.2
Duzib248G0408 Durio zibethinus HOM05D001991 ORTHO05D002030 6.1e-12 75.1 100 47.0
Manes.13G022300 Manihot esculenta HOM05D001991 ORTHO05D002030 6.1e-12 75.1 180 35.6
Phvul.002G259400 Phaseolus vulgaris HOM05D001991 ORTHO05D002030 6.1e-12 75.1 114 47.4
TAR371G0096 Trochodendron aralioides HOM05D001991 ORTHO05D002030 6.1e-12 75.1 76 57.9
Carub.0005s0437 Capsella rubella HOM05D001991 ORTHO05D002030 8.0e-12 74.7 115 45.2
Rhsim12G0108800 Rhododendron simsii HOM05D001991 ORTHO05D002030 8.0e-12 74.7 90 51.1
Ciclev10031235m.g Citrus clementina HOM05D001991 ORTHO05D002030 1.0e-11 74.3 99 42.4
Migut.E00212 Erythranthe guttata HOM05D001991 ORTHO05D002030 1.0e-11 74.3 98 49.0
MBI10_g31499_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 1.0e-11 74.3 100 47.0
Lalb_Chr07g0185411 Lupinus albus HOM05D001991 ORTHO05D002030 1.4e-11 73.9 115 42.6
TAR629G2755 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.4e-11 73.9 76 56.6
CARHR013350 Cardamine hirsuta HOM05D001991 ORTHO05D002030 2.3e-11 73.2 114 43.9
Prupe.1G246800 Prunus persica HOM05D001991 ORTHO05D002030 2.3e-11 73.2 101 48.5
BraA08t35175Z Brassica rapa HOM05D001991 ORTHO05D002030 3.0e-11 72.8 118 43.2
Hma1.2p1_0815F.1_g222670 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 3.0e-11 72.8 182 35.7
Actinidia08128 Actinidia chinensis HOM05D001991 ORTHO05D002030 3.9e-11 72.4 72 58.3
CANSAT01G2806 Cannabis sativa HOM05D001991 ORTHO05D002030 3.9e-11 72.4 71 57.7
Cpa.g.sc33.43 Carica papaya HOM05D001991 ORTHO05D002030 3.9e-11 72.4 102 45.1
Atru.chr11.2159 Acer truncatum HOM05D001991 ORTHO05D002030 5.2e-11 72.0 102 42.2
Glyma.05G174400 Glycine max HOM05D001991 ORTHO05D002030 5.2e-11 72.0 122 44.3
Sp2g15550 Schrenkiella parvula HOM05D001991 ORTHO05D002030 5.2e-11 72.0 114 43.0
arahy.Tifrunner.gnm1.ann1.FAC3HW Arachis hypogaea HOM05D001991 ORTHO05D002030 6.7e-11 71.6 117 40.2
Cc11_g15900 Coffea canephora HOM05D001991 ORTHO05D002030 6.7e-11 71.6 103 45.6
CsaV3_2G024990 Cucumis sativus L. HOM05D001991 ORTHO05D002030 6.7e-11 71.6 97 48.5
C08p46930 Brassica napus HOM05D001991 ORTHO05D002030 8.8e-11 71.2 94 46.8
BolC8t52231H Brassica oleracea HOM05D001991 ORTHO05D002030 8.8e-11 71.2 94 46.8
CiPaw.05G179600 Carya illinoinensis HOM05D001991 ORTHO05D002030 8.8e-11 71.2 100 48.0
arahy.Tifrunner.gnm1.ann1.YC9QB8 Arachis hypogaea HOM05D001991 ORTHO05D002030 1.1e-10 70.9 118 39.0
ClCG08G017650 Citrullus lanatus HOM05D001991 ORTHO05D002030 1.1e-10 70.9 98 48.0
Gohir.A01G163000 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.1e-10 70.9 99 45.5
Lalb_Chr12g0204031 Lupinus albus HOM05D001991 ORTHO05D002030 1.1e-10 70.9 72 48.6
Rhsim12G0039700 Rhododendron simsii HOM05D001991 ORTHO05D002030 1.1e-10 70.9 96 49.0
Sabra08G0140400 Salix brachista HOM05D001991 ORTHO05D002030 1.1e-10 70.9 94 46.8
THA.LOC104825667 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.1e-10 70.9 98 45.9
TWI18G0479 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.1e-10 70.9 107 44.9
Gohir.A03G133200 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.5e-10 70.5 100 47.0
Gohir.D02G157500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.5e-10 70.5 100 47.0
Gorai.005G176700 Gossypium raimondii HOM05D001991 ORTHO05D002030 1.5e-10 70.5 100 47.0
THA.LOC104824007 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.5e-10 70.5 100 45.0
vmacro16182 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 1.5e-10 70.5 85 49.4
Hma1.2p1_0079F.1_g041070 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 2.0e-10 70.1 101 47.5
Aqoxy5G03724 Aquilegia oxysepala HOM05D001991 ORTHO05D002030 2.6e-10 69.7 89 47.2
A08p32510 Brassica napus HOM05D001991 ORTHO05D002030 2.6e-10 69.7 114 41.2
MELO3C010696.2 Cucumis melo HOM05D001991 ORTHO05D002030 2.6e-10 69.7 98 46.9
Thhalv10003946m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 2.6e-10 69.7 113 44.2
Peaxi162Scf00128g00454 Petunia axillaris HOM05D001991 ORTHO05D002030 2.6e-10 69.7 79 53.2
C08p15780 Brassica napus HOM05D001991 ORTHO05D002030 3.3e-10 69.3 89 49.4
BolC8t49204H Brassica oleracea HOM05D001991 ORTHO05D002030 3.3e-10 69.3 89 49.4
MSTRG.558 Avicennia marina HOM05D001991 ORTHO05D002030 4.4e-10 68.9 99 49.5
BcaC03g17365 Brassica carinata HOM05D001991 ORTHO05D002030 4.4e-10 68.9 145 35.2
Lj4g0004810 Lotus japonicus HOM05D001991 ORTHO05D002030 4.4e-10 68.9 78 52.6
MSTRG.7948 Avicennia marina HOM05D001991 ORTHO05D002030 5.7e-10 68.6 103 44.7
Haze_12267 Corylus avellana HOM05D001991 ORTHO05D002030 5.7e-10 68.6 87 47.1
Duzib268G1304 Durio zibethinus HOM05D001991 ORTHO05D002030 5.7e-10 68.6 101 45.5
Gohir.D01G151800 Gossypium hirsutum HOM05D001991 ORTHO05D002030 5.7e-10 68.6 99 45.5
Gorai.002G188100 Gossypium raimondii HOM05D001991 ORTHO05D002030 5.7e-10 68.6 99 45.5
Nn3g16681 Nelumbo nucifera HOM05D001991 ORTHO05D002030 5.7e-10 68.6 103 42.7
EL10Ac6g13868 Beta vulgaris HOM05D001991 ORTHO05D002030 7.4e-10 68.2 117 40.2
BcaC03g17339 Brassica carinata HOM05D001991 ORTHO05D002030 7.4e-10 68.2 120 39.2
C02p53040 Brassica napus HOM05D001991 ORTHO05D002030 7.4e-10 68.2 120 39.2
Dinv15212 Davidia involucrata HOM05D001991 ORTHO05D002030 7.4e-10 68.2 93 48.4
HanXRQChr12g0371941 Helianthus annuus HOM05D001991 ORTHO05D002030 7.4e-10 68.2 111 41.4
Lsat_1_v5_gn_8_152681 Lactuca sativa HOM05D001991 ORTHO05D002030 7.4e-10 68.2 103 42.7
Potri.010G048200 Populus trichocarpa HOM05D001991 ORTHO05D002030 7.4e-10 68.2 95 44.2
vmacro01119 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 7.4e-10 68.2 84 50.0
Aa31LG2G6130 Aethionema arabicum HOM05D001991 ORTHO05D002030 9.7e-10 67.8 120 41.7
AL1G24670 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 9.7e-10 67.8 113 42.5
AL5G15170 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 9.7e-10 67.8 119 42.9
CAN.G272.2 Capsicum annuum HOM05D001991 ORTHO05D002030 9.7e-10 67.8 85 51.8
Oeu059773.2 Olea europaea HOM05D001991 ORTHO05D002030 9.7e-10 67.8 99 45.5
Migut.K00613 Erythranthe guttata HOM05D001991 ORTHO05D002030 1.3e-09 67.4 90 47.8
THA.LOC104805280 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.3e-09 67.4 101 43.6
TWI75G1322 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.3e-09 67.4 107 43.0
Actinidia01358 Actinidia chinensis HOM05D001991 ORTHO05D002030 1.7e-09 67.0 72 52.8
Carub.0001s1277 Capsella rubella HOM05D001991 ORTHO05D002030 1.7e-09 67.0 72 54.2
Sc04g0009620 Simmondsia chinensis HOM05D001991 ORTHO05D002030 1.7e-09 67.0 107 44.9
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 2.2e-09 66.6 87 49.4
Glyma.08G131600 Glycine max HOM05D001991 ORTHO05D002030 2.2e-09 66.6 115 44.3
Nitab4.5_0002653g0010 Nicotiana tabacum HOM05D001991 ORTHO05D002030 2.2e-09 66.6 78 52.6
Solyc05g013700.4 Solanum lycopersicum HOM05D001991 ORTHO05D002030 2.2e-09 66.6 79 51.9
Sopen05g008610 Solanum pennellii HOM05D001991 ORTHO05D002030 2.2e-09 66.6 79 51.9
CiPaw.06G066600 Carya illinoinensis HOM05D001991 ORTHO05D002030 2.8e-09 66.2 83 48.2
DCAR_024421 Daucus carota HOM05D001991 ORTHO05D002030 2.8e-09 66.2 91 46.2
Nitab4.5_0000229g0070 Nicotiana tabacum HOM05D001991 ORTHO05D002030 2.8e-09 66.2 78 52.6
PGSC0003DMG400018596 Solanum tuberosum HOM05D001991 ORTHO05D002030 2.8e-09 66.2 79 51.9
TPR.G6216 Trifolium pratense HOM05D001991 ORTHO05D002030 2.8e-09 66.2 131 40.5
arahy.Tifrunner.gnm1.ann1.2WLS1Y Arachis hypogaea HOM05D001991 ORTHO05D002030 3.7e-09 65.9 114 43.9
arahy.Tifrunner.gnm1.ann1.R6BV62 Arachis hypogaea HOM05D001991 ORTHO05D002030 3.7e-09 65.9 114 43.9
TAR374G1687 Trochodendron aralioides HOM05D000273 ORTHO05D000198 3.7e-09 65.9 80 50.0
TAR622G0091 Trochodendron aralioides HOM05D001991 ORTHO05D002030 3.7e-09 65.9 68 55.9
VMungo0251G2038 Vigna mungo HOM05D001991 ORTHO05D002030 3.7e-09 65.9 114 44.7
Dinv14734 Davidia involucrata HOM05D001991 ORTHO05D002030 4.8e-09 65.5 101 43.6
Lsat_1_v5_gn_4_3980 Lactuca sativa HOM05D001991 ORTHO05D002030 4.8e-09 65.5 69 53.6
Sabra10G0020600 Salix brachista HOM05D001991 ORTHO05D002030 4.8e-09 65.5 65 49.2
Zm00001eb246120 Zea mays HOM05D001991 ORTHO05D002030 4.8e-09 65.5 73 52.1
Ca_17780_v3 Cicer arietinum L. HOM05D001991 ORTHO05D002030 6.3e-09 65.1 67 55.2
HPP92_024687 Vanilla planifolia HOM05D001991 ORTHO05D002030 6.3e-09 65.1 79 53.2
Sp1g11570 Schrenkiella parvula HOM05D001991 ORTHO05D002030 8.2e-09 64.7 148 34.5
AUR62024243 Chenopodium quinoa HOM05D001991 ORTHO05D002030 1.1e-08 64.3 130 38.5
Hund25397 Selenicereus undatus HOM05D001991 ORTHO05D002030 1.1e-08 64.3 73 50.7
AT1G13020 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 1.8e-08 63.5 112 40.2
CSS0025753 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 1.8e-08 63.5 83 50.6
FvH4_4g26000 Fragaria vesca HOM05D001991 ORTHO05D002030 1.8e-08 63.5 130 48.5
FAN12G2989 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.8e-08 63.5 130 48.5
FAN12G4314 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.8e-08 63.5 130 48.5
Manes.12G021400 Manihot esculenta HOM05D001991 ORTHO05D002030 1.8e-08 63.5 91 45.1
Psat7g059440 Pisum sativum HOM05D001991 ORTHO05D002030 1.8e-08 63.5 72 48.6
SGA_v2.0_scaffold63G21739 Striga asiatica HOM05D001991 ORTHO05D002030 1.8e-08 63.5 93 44.1
A09p63480 Brassica napus HOM05D001991 ORTHO05D002030 2.4e-08 63.2 82 50.0
Nn4g22575 Nelumbo nucifera HOM05D001991 ORTHO05D002030 2.4e-08 63.2 94 44.7
C02p53060 Brassica napus HOM05D001991 ORTHO05D002030 4.1e-08 62.4 81 49.4
BolC2t11380H Brassica oleracea HOM05D001991 ORTHO05D002030 4.1e-08 62.4 81 49.4
BraA09t41698Z Brassica rapa HOM05D001991 ORTHO05D002030 4.1e-08 62.4 88 46.6
Medtr8g089785 Medicago truncatula HOM05D001991 ORTHO05D002030 5.3e-08 62.0 71 50.7
Potri.008G185400 Populus trichocarpa HOM05D001991 ORTHO05D002030 5.3e-08 62.0 66 50.0
Zm00001eb079540 Zea mays HOM05D001991 ORTHO05D002030 5.3e-08 62.0 75 50.7
FAN17G1615 Fragaria x ananassa HOM05D001991 ORTHO05D002030 9.1e-08 61.2 129 48.1
FAN22G0770 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.2e-07 60.8 129 48.1
DCAR_026504 Daucus carota HOM05D001991 ORTHO05D002030 1.6e-07 60.5 74 45.9
Eucgr.B03270 Eucalyptus grandis HOM05D001991 ORTHO05D002030 1.6e-07 60.5 72 50.0
Os04g0480100 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 1.6e-07 60.5 82 47.6
Aa31LG1G1780 Aethionema arabicum HOM05D001991 ORTHO05D002030 2.0e-07 60.1 89 43.8
RcHm_v2.0_Chr4g0433421 Rosa chinensis HOM05D001991 ORTHO05D002030 2.0e-07 60.1 106 43.4
MD13G1098600 Malus domestica HOM05D001991 ORTHO05D002030 2.6e-07 59.7 75 48.0
FAN07G0001 Fragaria x ananassa HOM05D001991 ORTHO05D002030 3.5e-07 59.3 129 47.3
TWI36G0509 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 5.9e-07 58.5 100 41.0
Peaxi162Scf00074g01126 Petunia axillaris HOM05D001991 ORTHO05D002030 1.0e-06 57.8 56 58.9
AUR62005498 Chenopodium quinoa HOM05D001991 ORTHO05D002030 1.3e-06 57.4 79 45.6
SEGI_18854 Sequoiadendron giganteum HOM05D001991 ORTHO05D002030 1.3e-06 57.4 57 56.1
Zm00001eb424960 Zea mays HOM05D001991 ORTHO05D002030 1.3e-06 57.4 103 40.8
Ah.03g133340 Amaranthus hybridus HOM05D001991 ORTHO05D002030 1.7e-06 57.0 107 41.1
Oeu027569.1 Olea europaea HOM05D001991 ORTHO05D002030 1.7e-06 57.0 57 61.4
Os02g0595800 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 1.7e-06 57.0 72 50.0
MBI09_g29903_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 2.2e-06 56.6 74 44.6
CiPaw.05G077800 Carya illinoinensis HOM05D001991 ORTHO05D002030 2.9e-06 56.2 82 39.0
SalBow8G0331 Salvia bowleyana HOM05D001991 ORTHO05D002030 2.9e-06 56.2 112 37.5
unitig_52.g17179 Utricularia gibba HOM05D001991 ORTHO05D002030 2.9e-06 56.2 58 56.9
SGA_v2.0_scaffold87G27064 Striga asiatica HOM05D001991 ORTHO05D002030 3.8e-06 55.8 117 37.6
Mapoly0057s0064 Marchantia polymorpha HOM05D001991 ORTHO05D002030 8.5e-06 54.7 82 46.3


User provided reference genes

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