Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-67 259.6 139 100.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-67 259.6 139 100.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.5e-61 238.8 139 92.1
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.3e-54 215.7 139 83.5
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.9e-54 215.3 139 83.5
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.8e-54 214.9 139 82.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.6e-54 214.2 139 84.2
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.6e-54 214.2 139 83.5
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 8.6e-54 213.8 139 82.0
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 8.6e-54 213.8 139 83.5
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 8.6e-54 213.8 139 82.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.1e-53 213.4 140 82.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 83.5
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.9e-53 212.6 139 83.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.3e-53 211.8 139 81.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 3.3e-53 211.8 139 81.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.3e-53 211.5 139 83.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.6e-53 211.1 148 81.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.6e-53 211.1 139 79.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 82.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 7.2e-53 210.7 140 81.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 9.5e-53 210.3 141 81.6
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 9.5e-53 210.3 139 80.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 9.5e-53 210.3 139 80.6
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 82.7
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 82.7
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 82.0
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.6e-52 209.5 139 82.0
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.1e-52 209.1 140 80.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 4.7e-52 208.0 139 81.3
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 6.1e-52 207.6 139 81.3
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 81.3
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 80.6
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.0e-51 206.8 140 81.4
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.0e-51 206.8 140 79.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.8e-51 206.1 147 77.6
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.8e-51 206.1 139 81.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.3e-51 205.7 139 80.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.0e-51 205.3 141 79.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.0e-51 204.9 140 80.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.0e-51 204.9 139 80.6
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 80.6
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 6.8e-51 204.1 139 78.4
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 8.9e-51 203.8 140 77.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.5e-50 203.0 139 79.1
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-50 202.6 126 91.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.0e-50 202.6 139 79.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 7.5e-50 200.7 113 95.6
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.3e-49 199.9 164 70.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.7e-49 199.5 140 77.1
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 2.2e-49 199.1 143 75.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 3.7e-49 198.4 138 77.5
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.7e-49 198.4 139 75.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 4.9e-49 198.0 141 76.6
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 4.9e-49 198.0 139 77.7
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.1e-48 196.8 140 75.7
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 139 77.7
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.1e-48 196.8 138 76.8
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 142 76.1
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-48 196.8 139 77.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.4e-48 196.4 138 75.4
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.4e-48 196.4 138 77.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 75.7
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.4e-48 195.7 139 78.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 75.7
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.2e-48 195.3 139 76.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.2e-48 195.3 138 76.8
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 3.2e-48 195.3 143 74.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 74.3
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 4.1e-48 194.9 139 75.5
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 7.0e-48 194.1 139 75.5
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 7.0e-48 194.1 143 74.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 9.2e-48 193.7 141 73.8
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.2e-47 193.4 139 75.5
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-47 193.4 141 74.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.2e-47 193.4 139 74.8
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-47 193.4 139 74.8
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.6e-47 193.0 140 74.3
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.6e-47 193.0 138 76.1
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-47 193.0 140 75.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.0e-47 192.6 138 76.1
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.0e-47 192.6 139 77.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-47 192.2 149 72.5
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.5e-47 191.8 141 74.5
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.5e-47 191.8 160 68.8
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 3.5e-47 191.8 153 71.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 5.9e-47 191.0 139 77.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 7.8e-47 190.7 138 75.4
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-46 189.9 139 74.1
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.7e-46 189.5 140 75.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 6.6e-46 187.6 139 73.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 8.6e-46 187.2 151 68.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 8.6e-46 187.2 151 68.9
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.5e-45 186.4 139 74.1
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.2e-44 183.3 140 71.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-44 183.0 144 71.5
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.0e-44 180.6 144 70.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.0e-43 180.3 141 71.6
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.3e-43 179.1 146 69.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 5.2e-43 177.9 148 69.6
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-42 176.8 152 65.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.2e-42 176.8 173 60.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.6e-42 175.6 176 58.0
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.6e-42 175.6 155 64.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-42 175.6 155 64.5
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.3e-41 173.3 139 69.1
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.7e-41 172.9 116 83.6
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.2e-41 172.6 113 82.3
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.2e-41 172.6 137 67.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-41 171.4 135 68.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.1e-40 168.3 168 58.3
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.0e-40 167.5 137 68.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.6e-39 164.9 135 68.1
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.5e-37 159.8 139 61.9
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.9e-37 159.5 167 54.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-36 156.4 114 75.4
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 4.7e-36 154.8 139 62.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.4e-35 153.3 119 73.1
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.0e-35 151.8 116 74.1
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.7e-33 146.4 115 73.0
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 6.4e-33 144.4 137 59.1
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.4e-32 142.5 97 80.4
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-32 142.1 135 60.0
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.1e-32 141.7 167 55.1
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.0e-31 137.9 131 61.8
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.0e-30 137.1 135 60.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.3e-29 131.7 155 52.9
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-28 130.2 109 66.1
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 6.2e-28 127.9 136 55.1
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.8e-27 126.3 119 62.2
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.3e-27 125.9 112 67.0
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.9e-25 118.2 96 66.7
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.4e-25 117.9 81 80.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.4e-25 117.5 80 80.0
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 5.4e-24 114.8 85 71.8
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-23 113.6 138 52.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-23 113.6 80 77.5
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 3.5e-23 112.1 85 70.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 4.6e-23 111.7 141 46.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.6e-23 111.7 80 76.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.0e-22 110.5 77 79.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-22 109.4 76 81.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 8.1e-20 100.9 69 73.9
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.8e-19 97.8 70 74.3
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.4e-18 95.1 69 72.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.4e-18 95.1 58 81.0
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 5.8e-18 94.7 85 62.4
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 8.4e-17 90.9 69 73.9
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 4.6e-15 85.1 57 80.7
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 3.0e-14 82.4 101 55.4
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 3.3e-13 79.0 77 59.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 5.6e-13 78.2 135 40.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 5.3e-11 71.6 72 55.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 5.3e-11 71.6 72 55.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 5.8e-10 68.2 46 73.9
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.9e-06 55.5 97 45.4
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.9e-06 55.5 97 45.4


User provided reference genes

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