Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 6.9e-63 243.8 124 100.0
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 2.7e-51 205.3 124 80.6
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 7.9e-51 203.8 121 80.2
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.3e-50 203.0 122 79.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.9e-50 201.4 122 78.7
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 5.1e-50 201.1 121 81.8
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 5.1e-50 201.1 123 78.9
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 5.1e-50 201.1 120 80.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.7e-50 200.7 123 78.9
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 8.7e-50 200.3 123 78.0
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.1e-49 199.9 120 78.3
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.1e-49 199.9 123 77.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.5e-49 199.5 123 78.9
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 2.5e-49 198.7 123 78.0
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.3e-49 198.4 121 77.7
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 5.7e-49 197.6 121 73.6
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.7e-49 197.6 121 78.5
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 5.7e-49 197.6 123 78.0
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 9.7e-49 196.8 123 76.4
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 9.7e-49 196.8 121 78.5
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.3e-48 196.4 121 78.5
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.3e-48 196.4 121 78.5
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.3e-48 196.4 120 79.2
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.6e-48 196.1 121 77.7
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.6e-48 196.1 121 76.9
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 2.2e-48 195.7 123 78.0
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.8e-48 195.3 121 76.9
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.8e-48 195.3 121 76.9
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 2.8e-48 195.3 123 77.2
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.8e-48 195.3 121 79.3
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.8e-48 195.3 121 76.9
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.8e-48 195.3 121 76.9
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.8e-48 195.3 121 76.9
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 3.7e-48 194.9 121 76.9
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 3.7e-48 194.9 121 76.9
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 4.8e-48 194.5 121 76.9
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.3e-48 194.1 123 77.2
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 6.3e-48 194.1 120 76.7
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 6.3e-48 194.1 121 76.0
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 6.3e-48 194.1 123 75.6
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 8.2e-48 193.7 123 76.4
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 8.2e-48 193.7 126 74.6
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.1e-47 193.4 121 76.0
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-47 193.4 121 76.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.8e-47 192.6 121 76.0
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.8e-47 192.6 121 76.0
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.8e-47 192.6 121 76.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 4.1e-47 191.4 121 73.6
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.3e-47 191.0 121 78.5
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 5.3e-47 191.0 121 75.2
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 5.3e-47 191.0 121 74.4
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 6.9e-47 190.7 121 75.2
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 6.9e-47 190.7 121 74.4
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 9.0e-47 190.3 121 76.9
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 9.0e-47 190.3 121 76.9
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-46 189.9 121 75.2
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.5e-46 189.5 121 76.9
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.5e-46 189.5 124 74.2
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.5e-46 189.5 121 72.7
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.6e-46 188.7 121 75.2
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.6e-46 188.7 121 74.4
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.4e-46 188.3 121 74.4
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 5.9e-46 187.6 120 75.0
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 7.7e-46 187.2 122 74.6
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.7e-46 187.2 122 73.8
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 7.7e-46 187.2 123 74.8
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.0e-45 186.8 123 72.4
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.0e-45 186.8 121 72.7
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.0e-45 186.8 121 72.7
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.0e-45 186.8 121 72.7
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.0e-45 186.8 121 72.7
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.0e-45 186.8 121 72.7
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.0e-45 186.8 121 72.7
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.7e-45 186.0 123 72.4
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.2e-45 185.7 122 74.6
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 3.8e-45 184.9 121 71.9
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.8e-45 184.9 119 74.8
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 5.0e-45 184.5 121 68.6
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 5.0e-45 184.5 121 71.9
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.5e-45 184.1 124 72.6
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 8.5e-45 183.7 122 72.1
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.4e-44 183.0 122 73.0
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.4e-44 183.0 122 73.0
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 1.4e-44 183.0 122 73.0
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 1.4e-44 183.0 122 73.0
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.4e-44 183.0 128 68.8
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.5e-44 182.2 123 72.4
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.5e-44 182.2 163 57.1
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 4.2e-44 181.4 122 72.1
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 4.2e-44 181.4 122 72.1
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.2e-44 181.4 121 72.7
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 5.5e-44 181.0 122 72.1
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 5.5e-44 181.0 122 72.1
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 5.5e-44 181.0 122 72.1
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 5.5e-44 181.0 122 72.1
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.2e-43 179.9 122 71.3
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.2e-43 179.9 122 71.3
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-43 179.9 121 71.9
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.2e-43 179.9 121 71.9
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.2e-43 179.9 121 71.1
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.7e-43 178.7 120 70.8
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.7e-43 178.7 121 68.6
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.7e-43 178.7 121 68.6
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.7e-43 178.7 120 71.7
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 3.6e-43 178.3 122 71.3
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.0e-42 176.8 125 67.2
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.0e-42 176.8 122 69.7
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.0e-42 176.8 121 70.2
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.0e-42 175.3 122 68.9
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.0e-42 175.3 121 67.8
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.1e-41 173.3 121 71.9
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.0e-41 172.6 123 63.4
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 5.7e-41 171.0 120 72.5
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 5.7e-41 171.0 121 64.5
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.8e-39 166.0 121 66.9
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 2.4e-39 165.6 120 65.0
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.1e-39 164.9 121 66.9
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.0e-38 162.5 105 78.1
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.0e-38 162.5 105 78.1
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 2.6e-38 162.2 138 62.3
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.6e-38 162.2 105 78.1
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.2e-37 159.1 120 68.3
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 3.8e-37 158.3 121 69.4
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 5.0e-37 157.9 102 76.5
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.1e-36 156.8 106 72.6
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.2e-36 155.2 104 74.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.4e-36 153.7 106 69.8
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.6e-33 145.6 104 70.2
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 5.7e-33 144.4 107 64.5
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.7e-32 142.9 105 64.8
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.7e-32 142.9 122 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.4e-31 139.8 121 54.5
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.4e-31 139.8 119 55.5
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.0e-29 133.7 122 51.6
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.5e-28 129.0 103 63.1
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 6.7e-26 120.9 101 60.4
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 3.1e-23 112.1 64 78.1
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 4.1e-23 111.7 76 72.4
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 9.1e-23 110.5 121 48.8
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.6e-22 109.8 62 80.6
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 7.7e-22 107.5 62 82.3
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.0e-21 107.1 62 77.4
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-21 106.7 64 79.7
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.7e-21 106.3 60 80.0
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 5.0e-21 104.8 59 79.7
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 8.5e-21 104.0 57 80.7
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.2e-19 100.1 58 75.9
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.6e-19 99.8 49 89.8
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.7e-19 99.0 54 85.2
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 6.1e-19 97.8 49 85.7
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.0e-18 97.1 53 84.9
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 5.2e-18 94.7 48 87.5
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 5.2e-18 94.7 49 81.6
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.5e-17 93.2 155 39.4
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.5e-17 93.2 57 75.4
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 3.7e-16 88.6 129 38.8
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.6e-14 83.2 144 35.4
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 3.2e-12 75.5 70 54.3
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 4.7e-11 71.6 49 73.5
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 6.3e-08 61.2 35 85.7
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 2.7e-06 55.8 97 38.1


User provided reference genes

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