Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.6e-244 847.8 431 100.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.5e-237 825.1 431 97.2
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 3.7e-188 661.8 432 78.5
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.1e-187 658.3 432 76.4
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.5e-186 656.4 435 76.8
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 8.5e-185 650.6 432 76.2
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.1e-183 646.0 433 75.3
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.0e-182 643.7 421 77.4
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.3e-182 642.5 426 75.1
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.9e-182 641.7 432 75.2
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.5e-181 639.8 421 77.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.2e-180 636.0 420 74.8
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.8e-180 635.6 420 74.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.7e-180 635.2 422 76.3
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.4e-179 633.3 432 73.6
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 3.1e-179 632.1 418 75.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.1e-179 631.7 420 74.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.1e-179 631.7 420 74.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 4.1e-179 631.7 421 75.8
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.0e-178 629.4 407 77.6
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.6e-178 629.0 406 76.6
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 7.7e-178 627.5 409 76.5
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.0e-177 627.1 432 73.4
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.2e-177 625.9 433 73.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.8e-177 625.2 433 72.5
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 5.0e-177 624.8 407 76.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.5e-177 624.0 435 72.4
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.1e-176 623.6 395 75.7
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.9e-176 622.9 409 75.8
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 2.5e-176 622.5 443 72.2
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.5e-176 622.5 420 72.9
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 4.2e-176 621.7 391 77.5
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 5.5e-176 621.3 427 73.1
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 6.1e-175 617.8 470 68.5
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.4e-174 616.7 396 73.7
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.8e-174 616.3 395 77.2
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 5.2e-174 614.8 399 77.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.0e-173 612.8 395 74.9
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 7.5e-173 610.9 434 70.5
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.7e-172 609.8 398 75.1
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.2e-172 609.4 434 70.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.7e-172 608.6 390 75.9
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 3.7e-172 608.6 391 74.7
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.7e-172 608.6 445 71.0
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 6.3e-172 607.8 428 71.5
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.3e-172 607.8 439 70.8
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 8.3e-172 607.4 396 75.0
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.1e-171 607.1 390 75.9
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.4e-171 606.7 431 71.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 4.1e-171 605.1 403 73.4
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 4.1e-171 605.1 432 70.6
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 5.3e-171 604.7 393 74.6
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 7.0e-171 604.4 390 76.2
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.2e-170 603.6 390 75.4
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.2e-170 603.6 391 74.7
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.2e-170 603.6 443 69.8
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.7e-170 602.4 428 71.0
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 2.7e-170 602.4 390 75.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.7e-170 602.4 403 73.4
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 3.5e-170 602.1 372 79.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.5e-170 602.1 418 70.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 7.7e-170 600.9 417 72.7
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.9e-169 599.0 410 72.2
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.9e-169 599.0 404 72.5
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.0e-169 598.2 421 70.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 6.5e-169 597.8 464 66.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.9e-168 596.3 390 74.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.5e-168 595.9 396 74.5
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.7e-167 592.4 419 70.2
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 8.0e-167 590.9 391 74.4
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 5.2e-166 588.2 425 68.2
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 5.2e-166 588.2 392 71.9
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 2.8e-164 582.4 410 71.2
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 3.7e-164 582.0 410 71.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 8.3e-164 580.9 438 69.6
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.8e-163 579.7 413 68.8
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.4e-163 579.3 401 73.3
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 4.1e-163 578.6 391 71.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 7.0e-163 577.8 410 70.7
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 7.0e-163 577.8 410 70.7
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.0e-161 573.9 416 70.0
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.7e-161 573.2 399 68.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.7e-154 549.3 378 73.8
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 4.5e-154 548.5 376 74.7
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.9e-153 545.4 428 63.3
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 8.6e-153 544.3 389 72.0
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.1e-152 543.9 420 66.0
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.3e-152 542.3 554 54.9
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 9.5e-152 540.8 411 66.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 8.0e-151 537.7 375 73.3
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 8.0e-151 537.7 431 65.9
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.4e-149 532.3 344 73.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 3.2e-147 525.8 369 71.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 6.0e-146 521.5 331 77.6
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 4.3e-144 515.4 400 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.6e-143 513.5 381 65.9
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.1e-142 509.2 376 63.0
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.7e-138 496.1 387 66.4
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.5e-138 495.7 341 71.0
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.7e-137 493.4 394 61.7
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.9e-136 490.0 389 64.8
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 6.8e-134 481.5 326 75.5
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 6.8e-126 454.9 401 61.6
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.4e-123 447.2 334 65.6
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.5e-122 442.6 338 68.0
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 7.1e-115 418.3 337 65.6
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 9.3e-115 417.9 369 55.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 9.9e-109 397.9 286 71.0
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.3e-105 387.5 273 71.4
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 2.3e-105 386.7 277 70.0
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.7e-103 379.4 315 62.2
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 3.4e-101 372.9 354 57.6
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.9e-96 357.1 405 47.9
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.1e-95 353.6 228 74.6
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 7.1e-91 338.6 399 46.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.3e-89 334.3 371 46.9
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 6.7e-65 252.3 170 67.1
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.7e-58 230.3 250 50.0
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-56 224.9 256 52.3
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.4e-56 223.0 129 82.2
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.5e-53 213.4 335 36.1
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 4.5e-53 213.0 123 82.9
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 7.2e-51 205.7 174 63.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 5.2e-49 199.5 187 58.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-43 180.6 167 55.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 7.8e-37 159.1 142 61.3
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.0e-28 130.6 418 28.9
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.2e-26 125.2 84 70.2
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.1e-26 124.4 95 65.3
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.8e-25 121.3 141 53.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.6e-21 106.7 97 61.9
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.6e-19 99.8 64 68.8
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.7e-15 87.0 67 64.2
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.3e-12 78.6 62 61.3
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.3e-12 77.8 49 73.5
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.3e-12 77.8 76 55.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 3.4e-08 63.9 64 48.4
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 5.4e-06 56.6 47 57.4


User provided reference genes

Program Settings