Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 2.8e-103 378.6 194 100.0
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 1.3e-95 353.2 197 93.4
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 9.8e-40 167.5 196 51.5
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 4.7e-34 148.7 195 47.7
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.2e-26 124.0 198 44.9
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.2e-26 124.0 198 44.9
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 4.4e-24 115.5 198 41.9
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 7.6e-24 114.8 198 37.9
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.2e-23 113.2 196 41.8
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 2.2e-23 113.2 196 41.8
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.8e-23 112.5 196 39.3
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 8.4e-23 111.3 198 40.4
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 1.9e-22 110.2 198 40.4
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 2.4e-22 109.8 196 37.8
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 5.4e-22 108.6 198 38.9
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 5.4e-22 108.6 196 38.3
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 9.2e-22 107.8 195 39.5
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.2e-21 107.5 197 40.1
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 2.7e-21 106.3 204 36.3
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 3.5e-21 105.9 197 37.6
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 6.0e-21 105.1 202 39.1
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 6.0e-21 105.1 198 37.9
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 6.0e-21 105.1 198 37.9
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 7.8e-21 104.8 204 36.3
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 1.7e-20 103.6 202 39.1
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 3.9e-20 102.4 197 39.6
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 5.1e-20 102.1 194 38.1
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 6.6e-20 101.7 203 36.5
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 8.6e-20 101.3 195 43.1
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.1e-19 100.9 193 38.3
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 2.5e-19 99.8 195 37.9
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 2.5e-19 99.8 192 37.5
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 5.6e-19 98.6 195 37.9
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 9.6e-19 97.8 197 38.6
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.2e-18 97.4 195 37.4
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.8e-18 96.3 195 37.4
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 3.6e-18 95.9 195 37.9
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 3.6e-18 95.9 194 39.2
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 4.7e-18 95.5 194 37.1
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 6.2e-18 95.1 197 35.5
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 6.2e-18 95.1 195 36.9
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.1e-18 94.7 195 36.9
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 8.1e-18 94.7 197 38.1
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 8.1e-18 94.7 202 37.6
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 2.4e-17 93.2 200 37.0
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 2.4e-17 93.2 194 36.6
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 6.9e-17 91.7 194 37.1
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 1.2e-16 90.9 194 35.1
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 2.0e-16 90.1 191 37.7
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 2.0e-16 90.1 194 37.1
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.4e-16 89.4 198 36.4
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 3.4e-16 89.4 204 36.8
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 7.6e-16 88.2 197 36.5
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 9.9e-16 87.8 212 34.9
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 1.3e-15 87.4 195 35.4
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 3.8e-15 85.9 197 35.0
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 4.9e-15 85.5 197 35.0
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 6.4e-15 85.1 194 36.1
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 1.1e-14 84.3 188 36.7
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 1.4e-14 84.0 200 37.0
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 4.2e-14 82.4 200 35.0
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 4.2e-14 82.4 195 35.4
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 7.1e-14 81.6 187 35.3
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 1.2e-13 80.9 198 33.8
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 1.6e-13 80.5 193 34.7
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 2.7e-13 79.7 200 34.5
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 2.7e-13 79.7 200 34.5
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 4.6e-13 79.0 197 37.6
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 4.6e-13 79.0 193 34.2
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 4.6e-13 79.0 189 32.8
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 4.6e-13 79.0 201 36.3
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 4.6e-13 79.0 201 34.8
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 6.0e-13 78.6 202 32.7
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 1.3e-12 77.4 200 35.0
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 6.6e-12 75.1 200 31.5
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 6.6e-12 75.1 200 33.0
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 8.7e-12 74.7 196 32.1
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 1.1e-11 74.3 184 31.5
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.1e-11 74.3 190 36.8
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.9e-11 73.6 189 34.4
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 2.5e-11 73.2 188 32.4
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.3e-11 72.4 201 31.3
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 4.3e-11 72.4 189 31.2
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 7.3e-11 71.6 198 30.3
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 6.2e-10 68.6 198 28.8
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 2.4e-09 66.6 193 27.5
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 3.8e-07 59.3 59 57.6
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 6.4e-07 58.5 88 45.5
SalBow8G3990 Salvia bowleyana HOM05D007286 ORTHO05D008955 3.2e-06 56.2 80 40.0
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 4.2e-06 55.8 66 54.5
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 4.2e-06 55.8 63 52.4
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 9.3e-06 54.7 32 81.2


User provided reference genes

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