Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2741.1 1381 100.0
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2735.3 1381 99.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1385 90.3
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1384 88.2
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1384 88.1
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2467.2 1384 88.0
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2467.2 1384 88.1
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1384 87.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1384 87.9
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2462.2 1386 88.1
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2461.8 1385 87.4
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2459.9 1384 87.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2459.5 1384 87.7
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2458.3 1385 87.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2454.5 1388 87.6
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2454.1 1383 87.5
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2454.1 1384 87.6
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2452.6 1383 87.0
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2452.2 1387 87.7
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2451.8 1383 87.6
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2451.4 1384 87.1
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2450.6 1386 86.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2450.2 1385 87.4
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1388 87.5
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1384 86.6
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1386 86.8
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2446.8 1384 86.9
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1384 86.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1385 87.1
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2444.8 1382 87.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1384 86.9
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1399 86.8
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2441.0 1385 87.4
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2440.6 1383 86.9
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2439.8 1385 87.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2436.8 1385 87.5
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2436.8 1383 87.1
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2435.2 1385 86.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2435.2 1383 86.8
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2435.2 1386 86.4
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2434.1 1383 86.9
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2434.1 1383 86.9
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2434.1 1383 86.9
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2433.3 1385 86.6
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2432.5 1383 87.0
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2432.1 1385 86.7
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2430.6 1383 86.8
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2429.8 1385 86.1
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2427.9 1383 86.3
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1386 86.7
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1400 85.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1383 86.3
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2426.4 1384 86.4
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2425.6 1384 87.0
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2425.6 1385 86.5
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2424.4 1387 86.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2423.7 1384 86.8
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2422.9 1383 86.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1387 86.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1383 86.5
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1383 86.6
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1383 86.0
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2420.2 1383 86.6
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2419.0 1410 85.2
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2414.0 1393 85.7
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2413.3 1385 85.6
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1385 85.6
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2404.8 1385 85.6
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2400.5 1385 85.6
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2399.0 1336 87.9
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2398.6 1383 85.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2396.3 1447 82.9
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2394.8 1384 84.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1356 87.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2384.8 1384 85.5
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2379.4 1384 85.5
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2379.0 1384 84.8
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1385 84.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1384 85.3
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2366.7 1385 84.7
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2365.9 1384 84.7
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2363.2 1385 84.4
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2362.0 1385 84.4
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2358.6 1385 84.5
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2357.0 1385 84.5
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2357.0 1387 84.1
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2357.0 1387 84.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2352.4 1384 84.0
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2352.0 1384 84.0
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2350.9 1384 84.0
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2346.6 1385 84.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2340.1 1386 84.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1384 84.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2300.4 1346 83.0
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2299.2 1383 82.7
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2296.9 1384 83.0
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2278.8 1330 83.3
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2265.0 1411 80.9
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2218.0 1259 87.1
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2214.1 1260 86.6
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2188.3 1336 80.0
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2184.1 1348 82.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2176.7 1354 78.6
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2168.7 1334 79.4
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2168.7 1262 85.3
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2152.9 1332 79.1
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2152.9 1332 79.1
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2142.9 1356 76.8
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1929.8 1121 85.2
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1919.4 1381 72.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1910.6 1109 85.3
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1882.5 1333 69.4
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1853.6 1402 70.7
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1849.3 1353 67.5
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1672.5 914 89.4
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1669.8 913 89.4
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1611.3 896 88.6
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1484.5 808 90.0
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1483.0 809 89.2
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1135.2 690 81.7
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1100.5 676 80.3
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 3.3e-299 1032.3 670 77.8
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 7.7e-296 1021.1 571 86.5
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.5e-262 910.6 1213 43.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.4e-260 904.0 592 77.5
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.4e-235 819.3 472 86.7
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 9.9e-235 818.1 472 86.2
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 4.0e-228 796.2 473 85.4
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.3e-207 728.0 471 78.1
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.3e-207 728.0 398 88.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 6.5e-178 629.4 1379 32.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.0e-163 581.3 1474 30.5
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 5.4e-108 397.1 821 33.3
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.8e-87 328.9 175 91.4
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.4e-63 249.6 147 81.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 3.9e-58 231.5 123 89.4
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.9e-45 188.7 107 87.9
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 4.8e-40 171.4 174 55.7
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.1e-31 142.1 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.3e-28 132.1 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.2e-25 123.6 91 68.1
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 9.5e-20 104.0 61 85.2


User provided reference genes

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