Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 0.0e+00 1108.2 597 100.0
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.8e-287 990.7 598 85.6
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 9.0e-286 986.5 598 86.3
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 6.5e-284 980.3 601 87.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 8.8e-281 969.9 597 84.8
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 8.2e-279 963.4 598 85.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 9.1e-278 959.9 596 83.1
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.0e-277 958.7 596 82.6
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.6e-277 958.4 589 84.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.6e-277 958.4 598 83.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 4.5e-277 957.6 597 83.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.0e-276 956.4 598 83.1
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.7e-276 955.7 598 85.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 9.4e-275 949.9 597 84.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.2e-274 949.5 598 84.6
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.7e-274 948.3 597 82.7
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.8e-271 938.3 598 81.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.1e-270 934.5 597 79.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.1e-270 934.5 598 80.4
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 3.5e-269 931.4 597 81.4
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 4.5e-269 931.0 598 81.1
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.2e-268 928.7 598 82.8
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 6.5e-268 927.2 598 80.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 8.5e-268 926.8 598 81.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.5e-267 925.2 598 80.1
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.7e-266 921.0 596 81.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.0e-265 919.8 598 81.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.0e-265 919.8 598 81.8
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 5.2e-265 917.5 596 81.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 8.8e-265 916.8 606 79.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.2e-264 916.4 598 81.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.5e-264 916.0 610 78.2
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 5.7e-264 914.1 599 79.6
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.2e-263 910.2 610 75.1
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.3e-262 907.5 600 79.7
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.3e-262 907.5 610 74.8
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.6e-261 906.0 605 78.3
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.6e-261 906.0 602 79.7
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.5e-261 904.8 602 79.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.9e-261 904.0 600 79.2
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.7e-261 903.7 602 79.7
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.0e-260 903.3 600 77.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-260 902.9 600 77.5
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.7e-260 902.5 600 77.3
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 8.5e-260 900.2 603 78.9
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 7.2e-259 897.1 592 78.4
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-258 895.2 602 76.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 6.1e-258 894.0 599 78.6
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.0e-257 893.3 600 77.7
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.8e-257 892.5 600 76.8
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.3e-257 892.1 607 78.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 8.8e-257 890.2 599 78.6
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 5.7e-256 887.5 598 77.4
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.3e-255 886.3 598 78.3
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.3e-255 883.6 598 77.6
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.1e-254 883.2 598 77.3
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 5.4e-254 880.9 598 76.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 5.4e-254 880.9 598 77.3
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 9.1e-254 880.2 598 76.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.0e-253 879.0 598 77.1
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 7.7e-253 877.1 598 77.4
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.0e-252 876.7 606 77.9
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 8.5e-252 873.6 590 77.5
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.5e-251 872.1 598 75.8
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.2e-251 871.7 603 75.5
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.0e-249 866.7 600 76.5
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.8e-249 865.9 610 74.8
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.8e-249 865.9 598 78.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 5.2e-249 864.4 601 75.9
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 8.8e-249 863.6 600 75.8
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-248 863.2 600 76.7
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-248 863.2 599 77.1
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.5e-248 862.8 603 77.9
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-248 862.4 598 76.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.7e-248 860.9 599 74.3
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.7e-248 860.9 599 74.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.7e-248 860.9 598 75.9
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.7e-247 859.4 603 75.3
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 6.3e-247 857.4 599 75.5
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 6.3e-247 857.4 599 75.5
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 6.3e-247 857.4 599 75.5
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 8.3e-247 857.1 596 75.2
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.1e-246 856.7 603 75.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 4.1e-246 854.7 600 78.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 7.0e-246 854.0 615 75.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.2e-245 853.2 602 74.4
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.6e-245 852.8 609 75.5
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.5e-245 851.7 607 74.3
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 7.8e-245 850.5 600 75.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.3e-244 849.7 596 76.5
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 2.9e-244 848.6 603 75.0
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 5.0e-244 847.8 597 73.7
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.1e-242 842.4 598 72.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 6.1e-242 840.9 597 72.9
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-241 840.1 598 72.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.5e-240 836.3 596 74.5
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 4.9e-239 831.2 601 74.5
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 4.9e-239 831.2 596 75.5
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.1e-238 830.1 604 74.5
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.7e-237 825.5 597 76.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.0e-236 821.2 599 73.0
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.9e-235 819.3 599 72.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-234 816.6 597 71.5
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 8.9e-233 810.4 601 74.4
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 9.2e-230 800.4 644 70.0
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.0e-228 794.7 609 70.6
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.5e-227 793.1 609 70.6
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-226 789.6 549 75.0
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 5.2e-225 784.6 556 71.0
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.2e-225 784.6 599 70.3
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.1e-222 776.9 597 70.9
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.4e-222 775.8 597 71.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 3.2e-222 775.4 609 69.1
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.7e-221 772.3 599 70.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 7.8e-221 770.8 873 52.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 7.8e-221 770.8 613 68.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.1e-219 766.9 597 71.5
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-219 765.0 603 68.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-203 713.8 566 66.1
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-193 679.9 478 75.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-176 624.0 597 58.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.9e-174 616.7 496 69.0
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.1e-169 599.4 520 66.7
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.8e-161 573.5 597 52.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.7e-159 567.0 602 52.8
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.4e-153 546.6 601 53.6
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.5e-142 510.8 597 53.9
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 9.5e-134 481.5 613 44.9
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.3e-130 471.1 574 45.8
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 3.8e-90 336.7 209 77.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-87 328.6 243 68.7
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.2e-83 315.1 322 53.4
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.1e-76 290.4 630 37.0
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 4.5e-75 286.6 237 70.0
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.9e-65 254.6 219 62.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.9e-57 228.0 580 29.3
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.0e-51 208.0 148 70.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.7e-47 193.0 151 67.5
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.7e-32 144.4 111 63.1
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.0e-31 141.0 201 43.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.6e-30 137.9 624 26.6
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 9.4e-25 119.4 79 70.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.7e-24 117.9 213 50.7
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 8.0e-24 116.3 79 69.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.0e-23 114.4 68 75.0
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.2e-19 102.4 115 45.2
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 8.3e-13 79.7 90 50.0
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.4e-12 79.0 59 67.8
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 8.0e-08 63.2 98 34.7


User provided reference genes

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