Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.5e-50 201.4 111 100.0
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-45 186.4 111 92.8
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 2.6e-21 105.5 113 60.2
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.3e-20 103.2 109 56.9
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.2e-20 102.4 114 60.5
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.9e-20 102.1 107 57.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 3.8e-20 101.7 110 58.2
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.4e-20 100.5 107 58.9
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-19 100.1 107 58.9
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.4e-19 99.8 105 55.2
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.9e-19 99.4 120 55.8
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.5e-19 99.0 112 55.4
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.2e-19 98.6 112 58.9
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 4.2e-19 98.2 110 57.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.5e-19 97.8 109 55.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 5.5e-19 97.8 110 60.0
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.3e-19 97.1 109 55.0
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.1e-18 95.9 110 55.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.7e-18 95.5 111 54.1
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 2.7e-18 95.5 112 54.5
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.7e-18 95.5 111 58.6
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 3.5e-18 95.1 111 54.1
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.5e-18 95.1 111 54.1
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 4.6e-18 94.7 109 56.9
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 4.6e-18 94.7 100 61.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 4.6e-18 94.7 106 58.5
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 4.6e-18 94.7 107 55.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 6.0e-18 94.4 110 55.5
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 7.9e-18 94.0 116 56.9
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.0e-17 93.6 109 51.4
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.0e-17 93.6 110 52.7
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.3e-17 93.2 112 55.4
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-17 93.2 108 56.5
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.3e-17 93.2 106 55.7
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.3e-17 93.2 112 54.5
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.8e-17 92.8 113 56.6
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.3e-17 92.4 106 50.0
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 3.0e-17 92.0 105 55.2
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-17 92.0 109 54.1
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 6.7e-17 90.9 110 59.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 8.7e-17 90.5 107 55.1
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 8.7e-17 90.5 103 57.3
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.1e-16 90.1 105 51.4
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.1e-16 90.1 104 54.8
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.1e-16 90.1 106 56.6
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.1e-16 90.1 106 56.6
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.5e-16 89.7 109 50.5
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.5e-16 89.7 112 50.0
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.5e-16 89.7 108 52.8
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.9e-16 89.4 106 52.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 2.5e-16 89.0 109 52.3
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 2.5e-16 89.0 105 54.3
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.5e-16 89.0 107 54.2
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 3.3e-16 88.6 112 51.8
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 3.3e-16 88.6 108 56.5
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.3e-16 88.6 105 55.2
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 5.7e-16 87.8 106 52.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.7e-16 87.8 110 58.2
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 5.7e-16 87.8 112 51.8
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.7e-16 87.8 112 50.9
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 7.4e-16 87.4 112 53.6
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.3e-15 86.7 105 50.5
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.3e-15 86.7 116 51.7
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.6e-15 86.3 108 56.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.6e-15 86.3 112 51.8
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 2.2e-15 85.9 112 50.0
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 2.2e-15 85.9 112 50.0
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 2.8e-15 85.5 111 49.5
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 2.8e-15 85.5 116 53.4
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 3.7e-15 85.1 109 51.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.7e-15 85.1 117 50.4
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 3.7e-15 85.1 110 50.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.8e-15 84.7 105 52.4
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 6.3e-15 84.3 103 52.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.3e-15 84.3 106 50.9
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 8.2e-15 84.0 118 50.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.8e-14 82.8 108 53.7
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.8e-14 82.8 105 51.4
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.8e-14 82.8 110 50.9
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 1.8e-14 82.8 111 50.5
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.8e-14 82.8 112 49.1
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 4.1e-14 81.6 111 50.5
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 9.0e-14 80.5 115 52.2
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 9.0e-14 80.5 116 51.7
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.5e-13 79.7 112 46.4
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 3.4e-13 78.6 116 50.9
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 4.5e-13 78.2 108 50.0
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 7.6e-13 77.4 100 53.0
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.9e-12 75.5 106 48.1
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 3.8e-12 75.1 108 50.0
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.8e-12 75.1 106 50.9
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 5.0e-12 74.7 115 49.6
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 6.5e-12 74.3 106 50.9
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 8.5e-12 73.9 106 49.1
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.1e-11 73.6 147 41.5
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.4e-11 73.2 82 59.8
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 4.2e-11 71.6 106 48.1
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 4.2e-11 71.6 110 46.4
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 5.5e-11 71.2 110 45.5
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 7.2e-11 70.9 106 50.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 7.2e-11 70.9 106 50.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 7.2e-11 70.9 106 50.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 7.2e-11 70.9 107 43.9
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 9.4e-11 70.5 110 48.2
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 9.4e-11 70.5 74 63.5
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-10 70.1 106 50.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.2e-10 70.1 106 50.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.2e-10 70.1 106 48.1
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-10 69.7 109 47.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-10 69.7 106 47.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.6e-10 69.7 106 47.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.6e-10 69.7 106 47.2
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 3.6e-10 68.6 120 40.8
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 4.6e-10 68.2 105 43.8
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 7.9e-10 67.4 107 48.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.8e-09 66.2 106 45.3
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.3e-09 65.9 104 46.2
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.9e-09 65.1 111 42.3
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 3.9e-09 65.1 108 45.4
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 5.1e-09 64.7 110 44.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 8.8e-09 63.9 48 75.0
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.3e-08 62.0 116 45.7
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 5.7e-08 61.2 109 45.9
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.7e-08 60.5 111 40.5
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.7e-07 59.7 111 40.5
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 1.1e-06 57.0 48 60.4
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.4e-06 56.6 111 43.2
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.8e-06 56.2 75 49.3
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.8e-06 56.2 44 63.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.4e-06 55.8 78 48.7
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 4.1e-06 55.1 78 46.2
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 6.9e-06 54.3 52 65.4
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 6.9e-06 54.3 74 43.2
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 9.1e-06 53.9 108 40.7


User provided reference genes

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