Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 1.3e-238 829.3 407 100.0
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 3.7e-222 774.6 407 93.4
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.7e-206 722.6 404 86.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.7e-206 721.5 404 86.6
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.5e-159 566.6 404 68.8
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 4.2e-157 558.5 406 67.2
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.6e-153 546.6 404 65.3
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.6e-153 545.4 404 65.3
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 4.7e-153 545.0 405 65.4
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 6.2e-153 544.7 405 65.7
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.8e-152 543.1 405 65.7
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.4e-152 542.7 408 64.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.1e-152 542.3 405 64.7
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 4.0e-152 542.0 405 64.9
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 5.2e-152 541.6 405 65.2
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 7.6e-151 537.7 404 65.1
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 7.6e-151 537.7 404 65.1
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.3e-150 537.0 405 63.5
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 2.9e-150 535.8 404 64.6
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 6.4e-150 534.6 402 64.7
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.4e-150 534.6 402 64.7
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 6.4e-150 534.6 405 64.9
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.4e-150 534.3 405 64.4
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 8.4e-150 534.3 405 64.4
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 5.4e-149 531.6 405 64.4
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 5.4e-149 531.6 405 64.4
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 5.4e-149 531.6 405 63.5
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 7.1e-149 531.2 405 64.4
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.7e-148 529.3 402 63.4
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 2.7e-148 529.3 405 63.0
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 6.0e-148 528.1 405 64.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 7.8e-148 527.7 405 64.0
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.0e-147 527.3 405 63.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 2.3e-147 526.2 407 63.4
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.0e-147 525.8 398 64.3
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.9e-147 525.4 405 64.0
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.6e-147 524.6 398 64.3
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.5e-146 523.5 405 63.7
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-146 523.1 406 64.5
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.9e-146 523.1 405 62.0
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 3.3e-146 522.3 405 63.5
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.6e-145 520.0 405 63.5
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.6e-145 520.0 402 63.2
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.8e-145 519.2 405 62.5
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.6e-145 518.8 404 62.4
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 3.6e-145 518.8 406 63.3
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 6.2e-145 518.1 407 62.2
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 8.1e-145 517.7 407 62.2
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 8.1e-145 517.7 405 61.0
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.4e-144 516.9 393 64.4
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.8e-144 516.5 404 61.4
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 5.3e-144 515.0 405 63.5
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.3e-144 515.0 405 62.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 5.3e-144 515.0 405 62.7
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 2.0e-143 513.1 404 62.4
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.0e-143 513.1 405 62.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.6e-143 512.7 407 62.9
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.6e-143 512.7 404 61.6
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 3.4e-143 512.3 406 61.8
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 3.4e-143 512.3 405 60.5
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.8e-143 511.5 405 61.2
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.3e-142 510.4 398 62.1
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 2.9e-142 509.2 405 62.5
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 4.9e-142 508.4 405 61.5
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 4.9e-142 508.4 405 61.0
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 6.4e-142 508.1 405 61.5
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 6.4e-142 508.1 406 62.1
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 8.4e-142 507.7 406 61.3
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.4e-141 506.9 399 62.7
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.9e-141 506.5 398 62.1
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.2e-141 505.8 399 60.7
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.4e-141 505.0 409 60.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.4e-141 505.0 409 60.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.4e-141 505.0 409 60.6
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 9.3e-141 504.2 405 60.2
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.1e-140 503.1 398 61.1
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 3.5e-140 502.3 405 62.5
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 4.6e-140 501.9 406 60.6
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 4.6e-140 501.9 405 60.5
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.0e-139 500.7 406 60.8
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.0e-139 500.7 428 59.3
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.0e-139 500.7 405 62.0
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.3e-139 500.4 399 60.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.8e-139 500.0 408 59.8
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.8e-139 500.0 409 60.1
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.3e-139 499.6 399 61.2
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 3.9e-139 498.8 406 59.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 3.9e-139 498.8 398 62.3
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 5.1e-139 498.4 408 60.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 5.1e-139 498.4 408 59.8
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 5.1e-139 498.4 436 58.5
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 6.7e-139 498.0 409 59.4
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 8.7e-139 497.7 405 61.2
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.5e-138 496.9 403 60.3
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.5e-138 496.9 403 60.5
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.5e-138 496.9 398 60.8
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.5e-138 496.1 398 61.3
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 9.6e-138 494.2 405 60.0
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 3.7e-137 492.3 403 59.1
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 8.1e-137 491.1 404 60.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.4e-135 485.7 399 58.6
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 4.5e-135 485.3 356 66.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 7.6e-135 484.6 400 60.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 7.6e-135 484.6 404 59.9
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.3e-134 483.8 397 60.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.7e-134 483.4 399 59.6
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.9e-134 482.6 405 59.8
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.9e-134 482.6 348 67.8
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.4e-133 480.3 396 60.9
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.9e-133 479.9 403 59.1
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.2e-132 477.2 491 52.1
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 3.3e-130 469.2 398 59.5
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.6e-129 466.8 398 59.5
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.4e-125 453.8 405 56.5
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.9e-125 453.4 400 55.2
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.9e-122 443.4 374 59.6
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 5.7e-122 441.8 413 52.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.7e-122 441.0 396 53.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.3e-121 440.7 396 54.8
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.2e-121 439.9 406 54.7
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.0e-115 421.0 404 54.2
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 4.3e-114 415.6 310 65.2
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 3.4e-111 406.0 379 54.4
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.8e-105 386.3 312 60.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.4e-99 367.5 404 47.0
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.7e-97 360.5 272 64.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 9.1e-96 354.8 272 65.1
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 5.9e-95 352.1 310 55.8
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 9.4e-93 344.7 409 42.8
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.1e-88 329.7 410 43.7
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 5.3e-88 328.9 260 61.2
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.1e-84 317.0 406 46.8
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.5e-77 294.3 401 40.4
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.8e-68 263.5 437 37.3
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 2.9e-65 253.4 247 55.1
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.2e-60 235.7 206 53.9
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 8.9e-59 231.9 176 63.6
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 5.8e-58 229.2 161 70.2
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 3.0e-54 216.9 185 57.3
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.5e-53 214.5 166 62.0
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.6e-50 203.8 174 56.9
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.7e-49 199.9 193 54.9
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.4e-48 198.0 339 34.5
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.6e-47 194.5 135 68.1
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.2e-44 184.9 148 60.1
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.1e-40 171.8 113 72.6
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.2e-31 141.7 93 68.8
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.4e-27 128.3 104 61.5
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.2e-18 98.6 96 54.2
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 6.5e-17 92.8 232 29.3
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 2.5e-13 80.9 70 54.3
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.6e-10 70.9 84 50.0


User provided reference genes

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