Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 6.5e-134 480.7 240 100.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.7e-121 438.3 252 89.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 7.3e-85 317.8 238 67.6
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.1e-83 312.4 240 66.7
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.1e-83 312.4 231 68.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.1e-83 312.4 242 66.9
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.0e-83 312.0 231 68.8
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.2e-83 311.6 234 67.5
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 6.8e-83 311.2 251 67.7
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 8.9e-83 310.8 233 70.4
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-82 310.1 234 67.5
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.0e-82 309.7 235 67.7
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.6e-82 309.3 242 66.5
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.4e-82 308.9 240 65.8
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.8e-82 307.4 255 63.9
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-81 306.2 227 69.2
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 8.3e-81 304.3 235 66.0
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.4e-80 303.5 236 64.4
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 4.1e-80 302.0 236 63.1
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 5.4e-80 301.6 247 64.0
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 7.0e-80 301.2 225 67.6
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 9.2e-80 300.8 238 66.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.7e-79 299.3 247 63.6
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.0e-78 297.4 241 64.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.0e-78 297.4 241 64.7
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-78 297.4 242 64.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-78 296.6 237 65.8
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.0e-78 295.8 233 67.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.9e-78 295.4 235 65.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.6e-78 294.7 234 65.8
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.1e-77 293.9 236 62.7
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.5e-77 293.5 230 65.7
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.9e-77 293.1 235 66.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.5e-77 292.7 238 64.7
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.5e-77 292.7 243 62.1
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.5e-77 292.7 242 61.2
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 3.3e-77 292.4 231 66.2
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 7.3e-77 291.2 248 61.3
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.2e-76 290.4 243 61.3
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.2e-76 290.4 243 61.3
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.8e-76 289.3 239 64.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.8e-76 289.3 238 62.2
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 4.7e-76 288.5 244 61.1
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.7e-76 288.5 242 61.6
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 8.1e-76 287.7 238 62.2
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.1e-75 287.3 243 60.5
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.1e-75 287.3 237 62.9
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.8e-75 286.6 253 60.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.3e-75 286.2 214 70.6
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.1e-75 285.8 230 64.3
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.1e-75 285.8 248 59.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 6.8e-75 284.6 251 63.3
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 6.8e-75 284.6 244 60.2
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 6.8e-75 284.6 226 64.6
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 8.9e-75 284.3 245 61.2
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.0e-74 283.1 219 67.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 3.4e-74 282.3 225 65.3
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.3e-73 280.4 236 64.0
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-73 280.4 174 77.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.7e-73 278.9 228 63.2
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.4e-72 276.2 191 70.7
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.2e-72 275.8 212 68.9
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 4.1e-72 275.4 239 62.3
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.1e-72 274.6 245 62.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.1e-72 274.6 226 64.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.2e-71 273.9 188 71.8
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.2e-71 273.9 229 61.6
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.6e-71 273.5 251 59.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.6e-71 271.9 192 71.9
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 4.6e-71 271.9 239 62.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.0e-70 270.8 182 71.4
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-70 270.8 184 71.2
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.0e-70 270.8 224 65.2
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.0e-70 270.8 195 68.2
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.3e-70 269.6 250 60.0
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.0e-70 269.2 235 60.0
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.9e-70 268.9 272 54.4
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.9e-70 268.9 252 59.1
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 5.1e-70 268.5 179 71.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 5.1e-70 268.5 230 60.9
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 5.1e-70 268.5 222 64.4
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 6.6e-70 268.1 229 59.8
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 8.6e-70 267.7 240 59.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 8.6e-70 267.7 230 57.8
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.1e-69 267.3 221 62.4
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.1e-69 267.3 177 72.9
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.9e-69 266.5 239 58.6
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.9e-69 266.5 219 62.1
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.3e-69 265.8 228 62.3
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 4.3e-69 265.4 226 62.8
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 9.5e-69 264.2 182 72.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 9.5e-69 264.2 230 57.8
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.2e-68 263.8 175 73.7
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.6e-68 263.5 182 70.9
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 2.1e-68 263.1 234 60.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.1e-68 263.1 234 60.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.1e-68 263.1 178 73.0
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 2.8e-68 262.7 239 60.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.8e-68 262.7 234 60.7
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 4.7e-68 261.9 240 58.8
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 8.1e-68 261.2 234 59.0
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 8.1e-68 261.2 169 77.5
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.1e-68 261.2 225 60.9
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.8e-67 260.0 182 70.9
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.8e-67 260.0 217 62.7
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 1.8e-67 260.0 236 55.9
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.3e-67 259.6 225 60.4
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 3.1e-67 259.2 190 65.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 3.4e-66 255.8 203 63.5
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.1e-64 250.8 234 57.3
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.4e-64 250.4 225 57.8
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-64 250.4 183 65.6
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.9e-64 250.0 226 56.6
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.4e-64 249.6 202 61.9
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.2e-64 249.2 236 56.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.4e-64 248.4 185 65.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.1e-64 248.1 209 62.2
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 9.2e-64 247.7 196 64.8
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 9.2e-64 247.7 184 67.4
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.7e-63 246.1 236 55.1
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-63 245.7 213 61.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 6.0e-63 245.0 195 64.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 6.0e-63 245.0 234 57.7
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.3e-61 238.8 193 65.8
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.6e-60 235.7 219 58.0
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 6.9e-59 231.5 165 64.2
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 8.9e-59 231.1 223 54.7
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.0e-58 229.9 225 57.3
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 2.6e-58 229.6 193 62.7
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.4e-58 228.8 326 42.9
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.7e-57 226.9 175 63.4
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 4.9e-57 225.3 217 53.0
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.4e-56 223.0 177 63.8
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 5.4e-56 221.9 190 63.7
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 9.3e-56 221.1 190 61.6
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 9.3e-56 221.1 190 61.6
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.2e-55 220.7 172 65.7
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 2.1e-55 219.9 189 60.3
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.5e-53 213.8 163 66.3
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.9e-53 213.4 187 59.9
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.3e-53 212.6 129 78.3
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-52 210.3 144 70.1
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.8e-52 208.8 140 72.1
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 4.0e-51 205.7 215 53.0
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 4.0e-51 205.7 215 53.0
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.2e-50 204.1 138 74.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 4.2e-48 195.7 125 69.6
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.3e-44 184.1 166 51.8
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.6e-44 183.7 167 57.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.4e-43 180.6 138 63.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.0e-33 147.9 206 40.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 3.3e-29 132.9 117 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.9e-24 117.1 129 48.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.1e-22 109.0 127 48.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.2e-17 93.6 218 30.7
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 8.5e-17 91.7 61 70.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 4.7e-15 85.9 60 70.0
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.0e-14 84.7 109 49.5
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.2e-12 77.0 48 62.5


User provided reference genes

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