Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.0e-227 793.1 406 100.0
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.2e-210 734.6 407 93.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.8e-81 306.6 422 48.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.8e-80 303.9 427 47.8
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.0e-78 298.1 422 47.9
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 5.0e-78 295.8 416 47.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.0e-78 295.8 414 47.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 8.0e-76 288.5 424 44.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.0e-75 286.6 423 45.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 5.2e-75 285.8 411 46.7
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.4e-74 282.7 423 44.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.2e-73 280.4 426 44.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.7e-73 279.6 424 44.6
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.7e-71 273.5 439 44.2
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 7.7e-71 271.9 418 45.2
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 3.8e-70 269.6 419 44.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 5.0e-70 269.2 421 44.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.3e-69 266.5 417 45.3
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.5e-69 265.0 428 43.7
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.4e-67 261.2 418 43.1
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-66 258.1 441 41.5
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 2.6e-66 256.9 430 42.3
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 5.7e-66 255.8 365 45.2
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 7.5e-66 255.4 420 44.0
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.9e-65 252.7 409 44.3
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.3e-65 252.3 422 43.8
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 8.3e-65 251.9 430 44.4
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 2.4e-64 250.4 423 42.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 3.1e-64 250.0 417 42.9
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.4e-64 249.2 418 42.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.2e-63 248.1 419 44.9
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.7e-63 246.9 433 43.0
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.5e-63 246.1 422 41.9
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.5e-63 246.1 422 41.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.3e-62 244.6 453 42.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.7e-62 244.2 417 42.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.3e-62 243.8 431 42.7
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 6.6e-62 242.3 441 39.0
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.5e-61 240.4 426 40.1
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 7.3e-61 238.8 426 40.4
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 9.5e-61 238.4 442 39.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.2e-60 238.0 425 42.6
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.8e-60 236.9 429 42.7
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.0e-59 235.0 423 41.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.4e-59 234.6 419 39.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.8e-59 234.2 432 40.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.3e-59 233.8 422 41.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.1e-59 233.4 440 40.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.2e-59 232.6 452 40.0
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 6.8e-59 232.3 441 39.5
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 8.9e-59 231.9 417 41.2
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.2e-58 231.5 424 38.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.4e-58 229.9 396 42.9
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 4.4e-58 229.6 414 40.3
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.8e-58 229.2 415 40.5
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 7.5e-58 228.8 444 39.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 9.8e-58 228.4 415 40.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.2e-57 227.3 437 39.6
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.7e-57 226.5 414 39.9
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.4e-57 225.7 420 40.5
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 8.3e-57 225.3 417 39.1
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.1e-56 224.9 435 39.5
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.9e-56 224.2 448 39.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.1e-56 223.0 414 40.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 7.0e-56 222.2 425 40.5
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 7.0e-56 222.2 427 41.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.7e-55 220.3 418 41.9
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.0e-55 219.2 406 39.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 6.0e-55 219.2 419 38.2
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 7.8e-55 218.8 427 38.9
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.3e-54 218.0 427 41.2
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-54 218.0 443 38.6
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.3e-54 217.2 421 39.0
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.9e-54 216.5 433 38.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.5e-53 214.5 414 38.6
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 3.3e-53 213.4 435 41.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.3e-53 212.2 425 40.0
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 4.7e-52 209.5 447 36.7
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.7e-52 209.5 422 39.1
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 6.2e-52 209.1 359 42.6
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-51 208.4 351 43.9
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.8e-51 207.6 413 38.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.3e-51 207.2 417 39.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.0e-50 204.1 442 35.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.0e-50 204.1 442 35.7
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.6e-50 203.8 441 35.6
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.8e-50 201.8 442 34.8
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.8e-50 201.8 429 38.7
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.3e-49 201.4 363 39.4
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-49 201.1 431 38.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.7e-49 201.1 347 42.1
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 8.3e-49 198.7 442 35.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 8.3e-49 198.7 442 34.4
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.1e-48 198.4 442 34.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.1e-47 194.1 409 35.7
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-47 193.0 434 37.6
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.6e-47 193.0 416 37.3
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 6.0e-47 192.6 446 35.2
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.0e-47 192.6 300 44.7
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.0e-46 190.3 356 40.4
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 5.1e-46 189.5 417 36.7
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.5e-45 187.2 442 33.9
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 9.5e-45 185.3 443 33.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.8e-44 183.7 447 33.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.1e-43 181.8 421 34.7
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.3e-43 180.6 446 32.3
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 4.4e-42 176.4 347 38.0
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.6e-39 167.9 301 41.2
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 4.6e-39 166.4 307 39.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.7e-38 164.5 258 41.5
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.1e-38 162.9 265 42.6
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.6e-38 162.5 443 32.7
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.3e-37 160.2 443 32.5
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 4.3e-37 159.8 451 32.4
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 4.3e-37 159.8 261 41.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 5.6e-37 159.5 267 41.2
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 4.0e-35 153.3 456 32.9
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 4.0e-35 153.3 232 44.0
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.2e-35 152.9 222 42.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.8e-35 152.5 269 36.8
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 8.9e-35 152.1 230 46.1
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.2e-34 151.8 291 38.5
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-33 148.3 198 47.5
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.8e-33 146.7 456 33.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 4.9e-33 146.4 223 40.4
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.4e-33 146.0 237 39.7
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.1e-32 145.2 512 30.9
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.1e-32 145.2 280 37.5
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.1e-32 145.2 340 36.2
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.4e-32 144.1 229 39.3
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.2e-32 143.7 242 40.1
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 3.2e-32 143.7 437 32.3
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 4.2e-32 143.3 453 33.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 7.1e-32 142.5 232 41.4
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.0e-31 139.4 241 37.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.0e-31 139.4 226 38.9
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.7e-30 137.9 412 31.3
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 8.7e-30 135.6 268 38.4
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 8.7e-30 135.6 210 42.9
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.9e-29 134.4 225 41.8
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.6e-28 131.3 263 36.9
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.6e-28 131.3 440 30.5
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.6e-28 131.3 265 38.1
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 5.3e-27 126.3 265 37.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.0e-26 124.4 222 37.4
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.6e-26 124.0 237 41.8
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.8e-26 122.9 206 38.8
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 7.6e-26 122.5 199 40.2
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 9.9e-26 122.1 301 33.9
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 6.4e-25 119.4 263 36.1
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.2e-23 115.2 405 30.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-23 115.2 235 37.4
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 2.7e-23 114.0 269 35.7
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.7e-23 114.0 269 34.2
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.7e-22 111.3 88 55.7
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.4e-18 97.1 162 43.2
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.5e-18 96.7 152 40.8
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-16 92.0 205 34.1
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-16 90.9 98 46.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.4e-16 90.9 98 46.9
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.7e-15 87.4 241 39.0
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.5e-15 87.0 208 34.6
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.7e-14 82.8 297 27.6
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.6e-13 79.7 51 64.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.3e-12 78.6 371 26.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.1e-12 77.8 47 63.8
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.2e-12 76.3 126 39.7
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.5e-09 66.2 51 58.8
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-07 61.6 192 28.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 3.0e-06 57.4 152 34.9


User provided reference genes

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