Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3843 Papaver somniferum HOM05D006415 ORTHO05D303547 0.0e+00 1146.7 647 100.0
PSO675G7206 Papaver somniferum HOM05D006415 ORTHO05D019674 7.6e-36 156.4 403 31.5
PSO541G4645 Papaver somniferum HOM05D006415 ORTHO05D019674 3.2e-34 151.0 404 31.2
PSO541G0612 Papaver somniferum HOM05D041449 ORTHO05D019674 4.8e-22 110.5 402 26.6
PSO675G0334 Papaver somniferum HOM05D041449 ORTHO05D019674 2.6e-20 104.8 386 26.2
CDE01G0813 Ceratophyllum demersum HOM05D006415 ORTHO05D008549 7.6e-20 103.2 409 24.0
Eucgr.C00751 Eucalyptus grandis HOM05D006415 ORTHO05D008549 8.7e-16 89.7 372 25.0
Sp7g30910 Schrenkiella parvula HOM05D006415 ORTHO05D008549 1.1e-15 89.4 357 26.6
A01p05010 Brassica napus HOM05D006415 ORTHO05D008549 1.5e-15 89.0 380 26.8
Sabra06G0167700 Salix brachista HOM05D006415 ORTHO05D008549 1.9e-15 88.6 384 24.0
AT4G33160 Arabidopsis thaliana HOM05D006415 ORTHO05D008549 2.5e-15 88.2 380 27.1
BraA01t00483Z Brassica rapa HOM05D006415 ORTHO05D008549 2.5e-15 88.2 363 25.6
PSO339G5773 Papaver somniferum HOM05D006415 ORTHO05D019674 5.6e-15 87.0 384 27.1
BolC1t00526H Brassica oleracea HOM05D006415 ORTHO05D008549 9.6e-15 86.3 369 25.5
Aqoxy3G03118 Aquilegia oxysepala HOM05D006415 ORTHO05D019674 1.3e-14 85.9 374 25.4
C01p05460 Brassica napus HOM05D006415 ORTHO05D008549 1.3e-14 85.9 369 25.7
HPP92_028258 Vanilla planifolia HOM05D006415 ORTHO05D008549 1.3e-14 85.9 403 23.3
Potri.006G217500 Populus trichocarpa HOM05D006415 ORTHO05D008549 1.6e-14 85.5 381 25.2
COL.COLO4_21174 Corchorus olitorius HOM05D006415 ORTHO05D008549 2.1e-14 85.1 388 24.5
FvH4_2g37090 Fragaria vesca HOM05D006415 ORTHO05D008549 2.1e-14 85.1 386 24.1
FAN20G2635 Fragaria x ananassa HOM05D006415 ORTHO05D008549 2.1e-14 85.1 389 23.7
arahy.Tifrunner.gnm1.ann1.4JU4D9 Arachis hypogaea HOM05D006415 ORTHO05D008549 2.8e-14 84.7 371 24.8
arahy.Tifrunner.gnm1.ann1.FB4QQZ Arachis hypogaea HOM05D006415 ORTHO05D008549 4.8e-14 84.0 371 24.8
CAN.G1399.1 Capsicum annuum HOM05D006415 ORTHO05D008549 4.8e-14 84.0 392 23.2
Nn8g38521 Nelumbo nucifera HOM05D006415 ORTHO05D008549 6.2e-14 83.6 393 25.2
Gorai.013G221600 Gossypium raimondii HOM05D006415 ORTHO05D008549 8.1e-14 83.2 418 25.8
Duzib150G0932 Durio zibethinus HOM05D006415 ORTHO05D008549 1.1e-13 82.8 382 25.1
Lj1g0019769 Lotus japonicus HOM05D006415 ORTHO05D008549 1.1e-13 82.8 380 23.9
Aqoxy7G00937 Aquilegia oxysepala HOM05D006415 ORTHO05D008549 1.4e-13 82.4 400 23.8
Gohir.D13G195500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 1.4e-13 82.4 418 25.8
Gohir.A13G188500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 1.8e-13 82.0 418 26.3
TAR624G0126 Trochodendron aralioides HOM05D006415 ORTHO05D008549 2.4e-13 81.6 416 25.5
FAN27G3353 Fragaria x ananassa HOM05D006415 ORTHO05D008549 3.1e-13 81.3 389 23.1
SEGI_35890 Sequoiadendron giganteum HOM05D006415 ORTHO05D008549 3.1e-13 81.3 250 26.4
Duzib168G1156 Durio zibethinus HOM05D006415 ORTHO05D008549 4.0e-13 80.9 385 26.0
Cpa.g.sc82.23 Carica papaya HOM05D006415 ORTHO05D008549 5.3e-13 80.5 373 23.9
PGSC0003DMG400007376 Solanum tuberosum HOM05D006415 ORTHO05D008549 6.9e-13 80.1 392 24.0
Thecc.09G066900 Theobroma cacao HOM05D006415 ORTHO05D008549 6.9e-13 80.1 389 23.9
AL7G18390 Arabidopsis lyrata HOM05D006415 ORTHO05D008549 9.0e-13 79.7 381 25.2
Glyma.14G105800 Glycine max HOM05D006415 ORTHO05D008549 9.0e-13 79.7 372 24.2
Gohir.A05G037600 Gossypium hirsutum HOM05D006415 ORTHO05D008549 9.0e-13 79.7 241 27.8
BcaC09g52124 Brassica carinata HOM05D006415 ORTHO05D008549 1.2e-12 79.3 309 26.5
ClCG05G015980 Citrullus lanatus HOM05D006415 ORTHO05D008549 1.2e-12 79.3 241 27.8
Sed0001226 Sechium edule HOM05D006415 ORTHO05D008549 1.5e-12 79.0 212 29.2
MD15G1046700 Malus domestica HOM05D006415 ORTHO05D008549 2.0e-12 78.6 377 24.1
BcaC09g52125 Brassica carinata HOM05D006415 ORTHO05D008549 2.6e-12 78.2 373 24.9
Lalb_Chr08g0244601 Lupinus albus HOM05D006415 ORTHO05D008549 2.6e-12 78.2 381 23.1
Lalb_Chr14g0375431 Lupinus albus HOM05D006415 ORTHO05D008549 2.6e-12 78.2 377 24.4
SGA_v2.0_scaffold22G09921 Striga asiatica HOM05D006415 ORTHO05D008549 2.6e-12 78.2 397 24.4
TWI32G1144 Tripterygium wilfordii HOM05D006415 ORTHO05D008549 2.6e-12 78.2 381 24.9
Aqoxy3G03119 Aquilegia oxysepala HOM05D006415 ORTHO05D019674 3.4e-12 77.8 374 25.1
Ca_13084_v3 Cicer arietinum L. HOM05D006415 ORTHO05D008549 4.5e-12 77.4 373 23.9
Manes.16G088100 Manihot esculenta HOM05D006415 ORTHO05D008549 4.5e-12 77.4 379 23.7
SEGI_32653 Sequoiadendron giganteum HOM05D006415 ORTHO05D008549 4.5e-12 77.4 174 33.3
GSVIVG01035605001 Vitis vinifera HOM05D006415 ORTHO05D008549 4.5e-12 77.4 349 24.4
MELO3C016934.2 Cucumis melo HOM05D006415 ORTHO05D008549 5.8e-12 77.0 245 26.5
Medtr1g014700 Medicago truncatula HOM05D006415 ORTHO05D008549 7.6e-12 76.6 195 29.2
Phvul.001G043800 Phaseolus vulgaris HOM05D006415 ORTHO05D008549 7.6e-12 76.6 384 24.0
CsaV3_4G036270 Cucumis sativus L. HOM05D006415 ORTHO05D008549 9.9e-12 76.3 245 26.5
Thhalv10025320m.g Eutrema salsugineum HOM05D006415 ORTHO05D008549 9.9e-12 76.3 399 24.3
Prupe.1G401100 Prunus persica HOM05D006415 ORTHO05D008549 9.9e-12 76.3 391 24.0
Sed0020634 Sechium edule HOM05D006415 ORTHO05D008549 9.9e-12 76.3 247 27.5
TWI34G1185 Tripterygium wilfordii HOM05D006415 ORTHO05D008549 9.9e-12 76.3 379 24.0
PSO339G6418 Papaver somniferum HOM05D006415 ORTHO05D008549 1.3e-11 75.9 392 23.5
RcHm_v2.0_Chr6g0304701 Rosa chinensis HOM05D006415 ORTHO05D008549 1.3e-11 75.9 389 22.4
THA.LOC104803713 Tarenaya hassleriana HOM05D006415 ORTHO05D008549 1.7e-11 75.5 383 23.8
Atru.chr7.1810 Acer truncatum HOM05D006415 ORTHO05D008549 4.9e-11 73.9 388 22.7
MD08G1047200 Malus domestica HOM05D006415 ORTHO05D008549 4.9e-11 73.9 377 22.8
PSO339G3229 Papaver somniferum HOM05D006415 ORTHO05D008549 4.9e-11 73.9 392 22.7
CANSAT25G1574 Cannabis sativa HOM05D006415 ORTHO05D008549 6.4e-11 73.6 368 23.4
Ciclev10010172m.g Citrus clementina HOM05D006415 ORTHO05D008549 8.4e-11 73.2 196 30.1
MBI19_g32871_MAGBIO Magnolia biondii HOM05D006415 ORTHO05D008549 8.4e-11 73.2 400 22.0
PSO421G0401 Papaver somniferum HOM05D006415 ORTHO05D008549 8.4e-11 73.2 219 29.7
Carub.0007s0729 Capsella rubella HOM05D006415 ORTHO05D008549 1.1e-10 72.8 377 24.9
Psat6g024360 Pisum sativum HOM05D006415 ORTHO05D008549 1.1e-10 72.8 384 22.7
VMungo0647G0664 Vigna mungo HOM05D006415 ORTHO05D008549 1.1e-10 72.8 383 23.5
HPP92_002171 Vanilla planifolia HOM05D006415 ORTHO05D008549 1.4e-10 72.4 387 22.5
Glyma.17G220600 Glycine max HOM05D006415 ORTHO05D008549 1.9e-10 72.0 374 23.0
Gorai.009G039600 Gossypium raimondii HOM05D006415 ORTHO05D008549 2.4e-10 71.6 241 26.6
Phvul.009G084700 Phaseolus vulgaris HOM05D006415 ORTHO05D008549 2.4e-10 71.6 144 34.0
Nn6g35727 Nelumbo nucifera HOM05D006415 ORTHO05D008549 3.2e-10 71.2 243 25.9
Gohir.D05G039100 Gossypium hirsutum HOM05D006415 ORTHO05D008549 4.2e-10 70.9 241 27.0
PSO104G0181 Papaver somniferum HOM05D006415 ORTHO05D008549 4.2e-10 70.9 217 27.6
TPR.G38916 Trifolium pratense HOM05D006415 ORTHO05D008549 7.1e-10 70.1 177 29.4
CDE05G3122 Ceratophyllum demersum HOM05D000036 ORTHO05D008549 1.6e-09 68.9 397 24.7
Sopen08g021230 Solanum pennellii HOM05D006415 ORTHO05D008549 1.6e-09 68.9 155 30.3
BcaNung02157 Brassica carinata HOM05D006415 ORTHO05D008549 3.5e-09 67.8 297 25.9
A03p61850 Brassica napus HOM05D006415 ORTHO05D008549 3.5e-09 67.8 335 25.4
Glyma.04G058200 Glycine max HOM05D006415 ORTHO05D008549 3.5e-09 67.8 177 28.2
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 4.6e-09 67.4 374 21.9
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 4.6e-09 67.4 383 22.5
BolC7t46397H Brassica oleracea HOM05D006415 ORTHO05D008549 6.0e-09 67.0 339 23.3
Duzib187G1400 Durio zibethinus HOM05D006415 ORTHO05D008549 6.0e-09 67.0 199 28.6
Glyma.06G058900 Glycine max HOM05D006415 ORTHO05D008549 6.0e-09 67.0 144 31.9
Lalb_Chr11g0063431 Lupinus albus HOM05D006415 ORTHO05D008549 6.0e-09 67.0 206 27.7
C07p59530 Brassica napus HOM05D006415 ORTHO05D008549 7.9e-09 66.6 337 24.0
Migut.A00333 Erythranthe guttata HOM05D006415 ORTHO05D008549 7.9e-09 66.6 375 22.4
Manes.03G055400 Manihot esculenta HOM05D006415 ORTHO05D008549 1.0e-08 66.2 216 27.3
Peaxi162Scf00922g00001 Petunia axillaris HOM05D006415 ORTHO05D008549 1.0e-08 66.2 400 22.5
SalBow4G3237 Salvia bowleyana HOM05D006415 ORTHO05D008549 1.0e-08 66.2 295 22.0
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 1.0e-08 66.2 378 23.5
Solyc08g067300.1 Solanum lycopersicum HOM05D006415 ORTHO05D008549 2.3e-08 65.1 153 28.8
TAR624G0622 Trochodendron aralioides HOM05D006415 ORTHO05D008549 2.3e-08 65.1 145 33.1
VMungo1309G0251 Vigna mungo HOM05D006415 ORTHO05D008549 3.0e-08 64.7 144 32.6
Glyma.11G251600 Glycine max HOM05D002809 ORTHO05D004563 5.1e-08 63.9 386 22.3
VMungo1383G2061 Vigna mungo HOM05D002809 ORTHO05D004563 6.7e-08 63.5 389 21.3
Mapoly0005s0092 Marchantia polymorpha HOM05D007753 ORTHO05D009385 8.7e-08 63.2 182 27.5
Nitab4.5_0000508g0110 Nicotiana tabacum HOM05D006415 ORTHO05D008549 8.7e-08 63.2 383 23.2
ATR0099G062 Amborella trichopoda HOM05D006415 ORTHO05D008549 1.1e-07 62.8 319 23.5
Glyma.18G005400 Glycine max HOM05D002809 ORTHO05D004563 1.1e-07 62.8 386 22.3
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 1.5e-07 62.4 354 22.9
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 1.5e-07 62.4 373 23.3
Oeu001617.1 Olea europaea HOM05D006415 ORTHO05D008549 1.5e-07 62.4 253 26.9
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 1.5e-07 62.4 145 31.0
THA.LOC104825498 Tarenaya hassleriana HOM05D002809 ORTHO05D004563 1.9e-07 62.0 166 29.5
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 2.5e-07 61.6 144 28.5
BcaNung02156 Brassica carinata HOM05D006415 ORTHO05D008549 3.3e-07 61.2 143 30.1
CDE05G2859 Ceratophyllum demersum HOM05D006415 ORTHO05D008549 3.3e-07 61.2 398 21.9
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.3e-07 61.2 353 22.9
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 3.3e-07 61.2 396 23.0
Atru.chr11.2338 Acer truncatum HOM05D002809 ORTHO05D004563 4.3e-07 60.8 168 26.8
Cfa017844 Carpinus fangiana HOM05D006415 ORTHO05D008549 4.3e-07 60.8 159 27.0
Haze_18364 Corylus avellana HOM05D006415 ORTHO05D008549 4.3e-07 60.8 206 25.2
RcHm_v2.0_Chr4g0430081 Rosa chinensis HOM05D002809 ORTHO05D004563 4.3e-07 60.8 383 23.0
AagrBONN_evm.TU.Sc2ySwM_362.1789 Anthoceros agrestis HOM05D002809 ORTHO05D009361 5.6e-07 60.5 381 20.7
CiPaw.16G071700 Carya illinoinensis HOM05D006415 ORTHO05D008549 5.6e-07 60.5 177 26.6
Peaxi162Scf00518g00033 Petunia axillaris HOM05D002809 ORTHO05D004563 5.6e-07 60.5 148 27.7
SGA_v2.0_scaffold46G17476 Striga asiatica HOM05D002809 ORTHO05D004563 7.4e-07 60.1 144 29.2
unitig_747.g21891 Utricularia gibba HOM05D006415 ORTHO05D008549 7.4e-07 60.1 256 24.2
Ca_10651_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 9.6e-07 59.7 280 24.3
Ca_10654_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 9.6e-07 59.7 280 24.3
FvH4_4g23620 Fragaria vesca HOM05D002809 ORTHO05D004563 9.6e-07 59.7 166 27.7
FAN07G0920 Fragaria x ananassa HOM05D002809 ORTHO05D004563 9.6e-07 59.7 166 27.7
FAN17G0774 Fragaria x ananassa HOM05D002809 ORTHO05D004563 9.6e-07 59.7 166 27.7
FAN12G0247 Fragaria x ananassa HOM05D002809 ORTHO05D004563 1.3e-06 59.3 166 27.7
Oeu006522.1 Olea europaea HOM05D002809 ORTHO05D004563 1.3e-06 59.3 164 26.8
BolC4t24659H Brassica oleracea HOM05D003005 ORTHO05D004170 1.6e-06 58.9 379 22.7
Glyma.05G147900 Glycine max HOM05D002809 ORTHO05D004563 1.6e-06 58.9 376 23.7
Glyma.08G104800 Glycine max HOM05D002809 ORTHO05D004563 1.6e-06 58.9 383 22.2
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 1.6e-06 58.9 147 29.3
Phvul.001G262700 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 1.6e-06 58.9 141 28.4
A07p11920 Brassica napus HOM05D002809 ORTHO05D004563 2.1e-06 58.5 145 29.7
Phvul.L002546 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 2.1e-06 58.5 383 22.2
RcHm_v2.0_Chr3g0456371 Rosa chinensis HOM05D005977 ORTHO05D007546 2.1e-06 58.5 391 21.2
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 2.8e-06 58.2 144 29.2
Zm00001eb143020 Zea mays HOM05D002809 ORTHO05D004563 2.8e-06 58.2 157 26.1
AL1G40740 Arabidopsis lyrata HOM05D002809 ORTHO05D004563 3.7e-06 57.8 145 28.3
CARHR026910 Cardamine hirsuta HOM05D002809 ORTHO05D004563 3.7e-06 57.8 174 28.2
Ca_16451_v3 Cicer arietinum L. HOM05D002809 ORTHO05D004563 3.7e-06 57.8 143 28.7
Sc14g0009090 Simmondsia chinensis HOM05D002809 ORTHO05D004563 3.7e-06 57.8 146 27.4
TAR371G1123 Trochodendron aralioides HOM05D002809 ORTHO05D004563 3.7e-06 57.8 157 27.4
arahy.Tifrunner.gnm1.ann1.8GYA0C Arachis hypogaea HOM05D002809 ORTHO05D004563 4.8e-06 57.4 143 28.0
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 4.8e-06 57.4 157 24.8
Cc08_g07830 Coffea canephora HOM05D006415 ORTHO05D008549 4.8e-06 57.4 209 24.9
COL.COLO4_20416 Corchorus olitorius HOM05D002809 ORTHO05D004563 4.8e-06 57.4 157 26.1
TPR.G17783 Trifolium pratense HOM05D002809 ORTHO05D004563 4.8e-06 57.4 143 28.7
BcaC02g10235 Brassica carinata HOM05D003005 ORTHO05D004170 6.2e-06 57.0 379 22.4
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 6.2e-06 57.0 143 28.7
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 6.2e-06 57.0 143 28.7
PSO017G6955 Papaver somniferum HOM05D002809 ORTHO05D004563 6.2e-06 57.0 140 27.9
Eucgr.H04635 Eucalyptus grandis HOM05D002809 ORTHO05D004563 8.1e-06 56.6 143 28.0
Nn4g22302 Nelumbo nucifera HOM05D002809 ORTHO05D004563 8.1e-06 56.6 143 28.7
Os01g0923900 Oryza sativa ssp. japonica HOM05D002809 ORTHO05D004563 8.1e-06 56.6 159 27.7
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 8.1e-06 56.6 387 21.4
TWI75G0386 Tripterygium wilfordii HOM05D002809 ORTHO05D004563 8.1e-06 56.6 143 29.4


User provided reference genes

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