Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 5.3e-156 554.3 276 100.0
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 3.9e-151 538.1 276 97.5
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 8.5e-130 467.2 274 84.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 5.9e-115 417.9 228 89.0
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 9.2e-100 367.5 249 73.9
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 3.0e-98 362.5 278 66.5
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.9e-98 362.1 280 66.1
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.3e-97 359.0 278 66.5
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.6e-97 358.2 284 65.5
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 5.6e-97 358.2 276 65.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.5e-97 357.5 284 66.2
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 2.1e-96 356.3 276 64.9
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 3.6e-96 355.5 277 66.4
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.4e-95 353.6 276 62.7
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.3e-95 352.8 277 64.6
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 4.0e-95 352.1 276 64.9
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 4.0e-95 352.1 282 63.8
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 4.0e-95 352.1 281 64.4
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.2e-94 350.5 229 75.1
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.5e-94 350.1 284 65.1
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 7.5e-94 347.8 276 64.1
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 9.9e-94 347.4 282 64.2
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.3e-93 347.1 283 62.5
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.3e-93 347.1 229 76.0
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.3e-93 347.1 229 75.1
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.3e-93 347.1 278 64.4
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.7e-93 346.7 276 64.1
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.9e-93 345.9 275 65.1
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 8.3e-93 344.4 278 64.7
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.9e-92 343.2 229 74.7
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.9e-92 343.2 224 74.1
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.9e-92 343.2 278 63.3
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 4.1e-92 342.0 277 63.2
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.4e-92 341.7 282 63.1
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 7.1e-92 341.3 229 72.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 9.2e-92 340.9 246 68.7
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.1e-91 339.7 272 63.6
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.5e-91 339.0 208 78.4
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 4.6e-91 338.6 276 63.4
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 4.6e-91 338.6 277 63.9
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 4.6e-91 338.6 270 64.4
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 4.6e-91 338.6 272 63.2
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.0e-90 337.4 246 69.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.3e-90 337.0 271 62.7
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.7e-90 336.7 207 79.7
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.7e-90 336.7 276 62.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.3e-90 336.3 277 63.2
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.3e-90 336.3 273 62.6
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.0e-90 335.9 283 61.5
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 5.1e-90 335.1 228 71.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 6.6e-90 334.7 262 65.3
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.1e-89 334.0 271 62.4
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.5e-89 333.6 271 62.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.9e-89 333.2 235 71.1
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 2.5e-89 332.8 265 63.0
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 2.5e-89 332.8 256 65.6
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.5e-89 332.8 245 66.9
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.5e-89 332.8 210 74.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 4.3e-89 332.0 275 62.2
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.3e-89 332.0 245 69.0
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 5.6e-89 331.6 283 61.8
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.6e-89 331.6 279 62.7
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.1e-88 329.7 245 68.6
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 4.7e-88 328.6 278 60.8
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 6.2e-88 328.2 265 63.4
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 6.2e-88 328.2 207 77.8
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 6.8e-87 324.7 205 77.1
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.8e-87 324.7 207 73.9
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 6.8e-87 324.7 233 68.7
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 8.9e-87 324.3 218 74.3
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.2e-86 323.9 275 60.0
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.0e-86 323.2 266 62.4
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.6e-86 322.8 230 68.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.6e-86 322.8 229 69.4
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 4.4e-86 322.0 204 77.5
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 4.4e-86 322.0 226 69.0
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 5.8e-86 321.6 263 62.7
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 5.8e-86 321.6 207 76.3
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 7.6e-86 321.2 277 61.7
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 9.9e-86 320.9 261 62.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 9.9e-86 320.9 278 61.2
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 9.9e-86 320.9 229 68.6
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 9.9e-86 320.9 260 62.3
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.3e-85 320.5 233 68.2
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.7e-85 320.1 233 67.0
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.2e-85 319.7 278 61.2
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 2.9e-85 319.3 219 70.3
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 3.8e-85 318.9 229 66.4
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 8.4e-85 317.8 266 60.9
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.1e-84 317.4 260 61.9
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.4e-84 317.0 207 72.9
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.2e-84 315.8 228 67.5
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 7.1e-84 314.7 207 72.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-83 313.9 272 61.0
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 4.6e-83 312.0 271 62.0
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 4.6e-83 312.0 271 60.9
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 6.0e-83 311.6 261 62.5
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 6.0e-83 311.6 257 65.0
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 7.8e-83 311.2 233 64.8
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.7e-82 310.1 196 77.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.7e-82 310.1 250 64.0
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 8.7e-82 307.8 204 75.5
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.9e-81 306.6 228 65.4
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 3.3e-81 305.8 252 61.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.3e-81 305.4 205 73.2
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 2.8e-80 302.8 251 57.8
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 3.6e-80 302.4 236 63.6
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.4e-76 290.4 208 66.8
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.4e-76 290.4 214 68.2
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 7.1e-76 288.1 212 66.0
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.7e-74 283.5 208 66.3
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 3.3e-73 279.3 223 63.2
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.8e-71 273.5 237 60.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 1.2e-70 270.8 202 65.8
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 7.1e-68 261.5 207 62.3
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.3e-65 252.3 181 71.3
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 2.7e-59 233.0 224 55.4
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.6e-57 225.3 216 51.9
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.8e-56 222.2 203 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 2.4e-55 219.9 209 52.2
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.0e-53 214.5 207 51.7
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 4.9e-53 212.2 232 45.7
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.6e-51 207.2 200 58.5
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 8.7e-50 201.4 212 50.0
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 9.7e-49 198.0 119 72.3
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 6.3e-48 195.3 196 56.1
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.4e-44 184.1 233 39.5
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 5.7e-41 172.2 109 78.0
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 6.5e-37 158.7 213 39.4
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.4e-31 141.0 127 60.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 7.2e-28 128.6 93 71.0
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 9.4e-28 128.3 130 53.8
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.0e-22 110.5 104 53.8
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 6.5e-21 105.5 88 67.0
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 5.7e-17 92.4 110 41.8
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 9.7e-17 91.7 115 49.6
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.7e-16 90.9 136 41.9
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 3.4e-09 66.6 253 30.4
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 3.7e-08 63.2 44 70.5
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 3.1e-07 60.1 87 41.4


User provided reference genes

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