Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1732.2 871 100.0
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1701.8 871 98.2
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1229.9 869 71.5
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1213.4 850 73.6
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1194.9 865 69.6
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1188.7 868 70.4
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1183.7 839 70.8
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1177.5 845 70.7
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1174.1 835 71.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 868 69.9
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1171.4 868 68.4
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1171.4 837 70.8
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1163.7 842 70.4
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1162.9 866 68.0
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 864 67.9
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 865 68.2
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1159.1 876 68.9
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 876 68.9
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 847 69.7
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1153.3 876 68.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1148.7 844 69.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1144.8 875 67.9
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1144.0 904 66.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1138.3 867 67.7
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1137.9 867 67.1
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1134.0 866 67.3
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1130.9 861 69.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1128.6 840 68.9
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1127.5 854 68.5
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 818 70.4
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1125.9 842 67.1
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1124.4 865 66.9
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1121.7 835 68.3
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1120.5 837 69.1
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1118.6 870 67.0
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1118.6 865 66.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1116.7 865 66.5
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1116.7 861 66.1
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1115.9 857 67.8
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1115.9 842 67.0
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1115.1 884 66.2
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 845 66.4
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 848 67.2
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 870 66.6
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 870 66.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1112.1 857 67.9
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 865 66.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 876 66.7
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 854 67.7
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1106.7 864 65.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1104.7 869 65.8
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 969 61.2
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 866 65.9
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 861 65.3
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1095.1 843 65.7
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1093.2 850 66.1
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1092.4 729 74.6
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1089.3 836 65.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1089.3 841 66.1
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1088.9 840 66.3
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 841 65.8
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1084.3 868 64.6
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1084.3 840 66.8
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 842 66.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1080.1 768 71.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1080.1 760 72.6
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 835 65.4
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1078.2 863 65.2
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1077.0 868 64.4
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1076.6 840 65.5
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 6.0e-312 1073.5 900 63.3
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 1.2e-311 1072.8 772 70.9
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 1.7e-309 1065.8 842 65.3
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.1e-308 1063.1 835 64.6
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 4.2e-308 1061.2 867 62.7
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.3e-306 1055.4 859 63.4
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.0e-305 1052.4 871 63.8
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 2.0e-305 1052.4 881 64.0
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 9.7e-305 1050.0 921 61.2
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.7e-304 1049.3 962 60.2
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 2.2e-304 1048.9 865 64.6
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 5.9e-302 1040.8 952 59.9
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 3.8e-301 1038.1 851 63.6
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.8e-301 1038.1 765 69.2
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 6.5e-301 1037.3 835 63.5
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 8.5e-301 1036.9 844 63.6
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 8.5e-301 1036.9 844 63.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.5e-300 1035.4 835 64.8
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.2e-300 1035.0 834 62.9
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 7.2e-300 1033.9 944 59.0
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 9.7e-297 1023.5 836 63.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.7e-296 1021.5 837 63.1
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 8.3e-296 1020.4 836 63.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 2.7e-294 1015.4 838 62.8
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 2.7e-294 1015.4 838 62.8
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 5.9e-294 1014.2 852 62.4
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 1.7e-293 1012.7 819 64.3
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.9e-293 1011.9 834 61.0
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.0e-290 1003.4 866 59.6
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 8.8e-290 1000.3 881 61.1
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 1.2e-289 1000.0 995 55.8
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 1.2e-286 989.9 741 68.6
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.4e-281 971.5 710 69.2
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 7.5e-281 970.7 722 68.3
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.9e-277 958.7 844 59.0
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 5.6e-276 954.5 755 64.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 5.2e-274 948.0 870 57.7
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.9e-272 942.2 791 61.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-269 933.3 720 65.8
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.9e-264 914.8 851 58.0
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.7e-262 909.1 850 58.0
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.8e-257 891.3 746 63.0
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.2e-249 867.1 706 65.4
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.5e-244 850.1 673 64.8
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 7.6e-233 811.2 536 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.5e-228 796.2 854 51.2
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.1e-226 790.8 773 57.3
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 9.0e-226 787.7 867 52.6
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.6e-206 722.2 541 68.0
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.0e-204 716.8 868 47.9
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.4e-204 714.9 856 47.3
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.2e-199 699.1 868 45.5
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.8e-192 676.0 459 74.5
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.3e-168 597.8 763 46.8
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 8.6e-168 595.1 457 66.3
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 2.1e-166 590.5 443 70.4
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.9e-160 569.7 540 57.4
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.9e-152 543.1 467 60.2
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.9e-152 543.1 810 41.7
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.0e-148 530.8 491 60.3
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 2.1e-145 520.8 471 59.4
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.5e-145 520.0 394 66.8
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.6e-142 511.1 401 65.3
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.1e-137 494.2 738 43.1
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 6.2e-126 456.1 460 54.6
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.0e-116 424.5 366 62.0
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 8.7e-112 409.1 303 66.0
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.3e-111 407.1 383 54.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.8e-110 403.3 352 62.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.2e-98 363.6 319 58.0
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 2.1e-97 361.3 295 61.0
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 3.2e-90 337.4 331 54.7
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.7e-89 334.3 287 59.9
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.5e-74 285.4 199 71.4
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 4.0e-72 277.3 246 57.7
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 2.0e-63 248.4 187 66.3
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.1e-61 241.1 253 53.0
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.0e-56 224.6 173 61.8
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 5.9e-52 210.3 158 70.3
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 6.8e-48 196.8 509 29.9
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.5e-47 195.7 130 73.8
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.8e-41 174.9 270 43.7
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.2e-37 161.4 169 55.0
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 3.4e-31 141.4 72 97.2
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.5e-31 140.2 128 62.5
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.5e-26 125.2 124 53.2
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.6e-23 115.2 110 57.3
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.9e-21 109.0 119 51.3
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.3e-18 97.8 74 62.2
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.2e-15 89.7 56 71.4
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-12 79.7 97 48.5
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.1e-11 74.3 79 54.4
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 9.6e-10 70.1 79 50.6
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.7e-06 59.3 52 53.8
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.4e-06 57.4 35 74.3
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 6.4e-06 57.4 35 74.3
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 6.4e-06 57.4 35 74.3


User provided reference genes

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