Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 6.0e-305 1050.0 535 100.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 4.3e-295 1017.3 537 96.8
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 5.2e-200 701.4 540 67.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.2e-196 690.3 541 66.4
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.1e-193 679.5 540 64.3
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.7e-190 668.7 546 62.8
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 5.4e-189 664.8 540 63.5
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.1e-189 664.5 555 62.5
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.5e-188 662.1 542 64.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.8e-188 661.0 540 63.1
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.9e-187 658.7 540 64.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.6e-187 657.9 542 63.1
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.9e-186 656.4 542 62.7
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.3e-186 655.2 542 62.5
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-185 653.7 542 61.6
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.8e-185 652.5 542 61.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 3.6e-185 652.1 541 61.9
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 6.2e-185 651.4 544 61.0
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.8e-184 649.8 480 66.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.2e-183 647.1 458 68.8
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.4e-183 645.6 542 62.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 6.4e-182 641.3 456 68.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 8.4e-182 641.0 541 62.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 8.4e-182 641.0 467 67.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.4e-181 640.2 544 61.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.4e-181 640.2 540 62.4
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.1e-181 638.6 540 61.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 9.2e-181 637.5 465 68.0
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.2e-180 637.1 456 68.4
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.3e-179 632.9 470 66.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.0e-179 632.5 469 67.2
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.0e-179 632.5 469 67.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 8.6e-179 630.9 565 59.1
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.5e-178 630.2 503 64.6
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.9e-178 629.8 544 60.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.9e-178 629.8 541 60.4
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.5e-178 629.4 565 58.9
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 5.6e-178 628.2 435 70.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 7.3e-178 627.9 435 70.3
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.2e-177 627.1 463 67.0
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.6e-177 626.7 541 60.8
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-177 625.9 543 61.1
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.7e-177 625.2 483 64.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.4e-176 623.6 482 65.8
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-176 623.2 538 61.2
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.1e-176 622.5 468 65.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.2e-176 621.7 544 59.6
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 6.9e-176 621.3 547 60.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 9.0e-176 620.9 540 59.8
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.5e-175 620.2 543 61.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.0e-175 619.8 499 63.7
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.0e-175 619.8 540 60.6
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.4e-175 618.6 487 63.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.8e-175 618.2 452 68.4
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 7.6e-175 617.8 546 58.8
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-174 617.1 540 60.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-174 616.7 456 68.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.7e-174 616.7 541 61.2
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-174 615.9 554 59.6
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 5.4e-173 611.7 456 65.8
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 7.1e-173 611.3 544 59.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.6e-172 610.1 551 57.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.3e-171 606.3 608 54.6
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.6e-169 599.0 463 63.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 4.5e-167 592.0 463 63.9
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.3e-166 590.5 538 58.2
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.2e-166 589.7 540 57.6
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.9e-166 589.3 435 67.6
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 6.4e-166 588.2 408 70.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.2e-164 583.9 541 57.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.7e-164 582.8 465 62.4
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 6.0e-164 581.6 542 58.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 4.3e-162 575.5 455 62.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 6.2e-161 571.6 539 56.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.4e-160 569.7 492 58.5
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 6.9e-160 568.2 453 62.3
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.9e-160 568.2 415 68.0
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.5e-159 567.0 473 60.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.6e-159 566.2 462 63.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 7.6e-159 564.7 538 56.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-158 563.9 505 57.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-158 563.9 505 57.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 2.2e-158 563.1 453 62.0
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 6.4e-158 561.6 564 55.9
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.1e-157 560.8 461 62.9
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.2e-157 558.9 541 54.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.2e-156 557.4 456 60.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.5e-156 555.8 489 58.3
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.8e-155 553.5 463 59.6
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 6.7e-155 551.6 464 61.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 8.7e-155 551.2 819 42.0
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 5.6e-154 548.5 403 66.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.3e-153 547.4 614 51.6
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 9.0e-152 541.2 454 60.4
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.4e-151 539.3 539 54.0
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.4e-149 533.9 394 66.2
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.9e-146 523.5 651 47.9
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.2e-145 520.0 491 55.6
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-143 514.2 394 65.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 2.5e-141 506.5 455 56.7
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.2e-140 504.2 423 61.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.7e-140 503.1 447 59.1
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.8e-139 500.4 447 59.1
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.1e-139 498.8 570 49.6
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.0e-134 484.6 447 56.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.9e-133 480.3 425 60.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.9e-133 480.3 421 59.9
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.4e-131 474.2 453 56.3
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.5e-130 470.7 433 55.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.7e-126 457.2 444 55.2
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 8.0e-124 448.4 466 51.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.9e-117 427.2 555 45.8
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.0e-110 404.8 448 52.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.6e-108 397.5 391 55.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.6e-108 396.4 490 47.6
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.5e-93 347.8 437 44.9
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 8.3e-89 332.0 440 42.0
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 6.6e-86 322.4 296 57.8
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.8e-83 314.3 508 40.0
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.3e-78 297.4 300 52.7
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.0e-70 271.9 367 43.1
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 3.0e-70 270.4 217 60.8
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 8.1e-68 262.3 416 40.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 6.6e-62 242.7 195 63.1
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.7e-49 201.4 161 62.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.7e-49 201.4 209 53.1
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 3.9e-46 190.3 250 47.2
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.0e-43 180.3 264 45.1
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-42 178.7 264 43.9
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.5e-42 178.3 449 32.5
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.5e-42 176.8 189 50.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-35 155.6 184 46.7
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.4e-35 155.2 142 59.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.0e-35 153.7 259 41.3
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 9.0e-35 152.5 116 61.2
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.6e-34 151.0 251 43.0
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-33 148.3 134 60.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.2e-33 147.9 243 42.4
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 5.5e-32 143.3 97 71.1
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 9.3e-32 142.5 100 63.0
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-31 142.1 255 40.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-31 141.4 98 69.4
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.7e-31 141.0 146 52.1
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.0e-31 139.8 98 68.4
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-30 137.9 124 59.7
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.8e-27 128.3 116 56.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-24 118.6 79 72.2
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.3e-22 111.3 151 45.0
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.8e-19 101.7 239 35.1
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.6e-18 97.8 108 53.7
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.7e-18 96.3 62 74.2
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.7e-18 96.3 105 47.6
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 6.5e-17 93.2 94 47.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.1e-16 92.4 223 33.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 3.2e-16 90.9 223 34.1
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.7e-15 87.8 126 38.1
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.4e-14 85.5 54 74.1
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-13 82.0 62 59.7
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-13 82.0 62 59.7
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.9e-10 70.1 132 37.9
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 8.0e-07 59.7 38 68.4
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 8.0e-07 59.7 38 68.4
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 8.0e-07 59.7 38 68.4
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 8.0e-07 59.7 38 68.4
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 6.7e-06 56.6 55 50.9
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 8.8e-06 56.2 37 70.3
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 8.8e-06 56.2 37 70.3
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 8.8e-06 56.2 37 70.3


User provided reference genes

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