Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-164 582.4 296 100.0
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.7e-158 562.0 296 96.6
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-155 552.4 296 94.3
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-154 550.1 296 93.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.4e-154 548.9 296 94.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 8.6e-128 460.7 300 79.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 5.6e-127 458.0 300 77.7
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 9.5e-127 457.2 301 78.4
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.6e-126 456.4 300 77.0
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.4e-125 453.4 300 77.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 3.0e-125 452.2 300 76.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 4.4e-124 448.4 298 76.5
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 4.4e-124 448.4 300 76.0
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.7e-124 448.0 300 76.3
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 9.8e-124 447.2 297 76.1
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 3.7e-123 445.3 300 75.7
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.1e-122 443.7 294 77.6
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.4e-122 443.4 300 76.3
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.8e-122 443.0 300 75.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.4e-122 442.6 295 76.3
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.2e-122 442.2 295 77.3
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 7.8e-121 437.6 300 76.3
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.0e-120 437.2 294 75.5
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.3e-120 436.0 310 73.2
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.5e-119 433.3 293 76.5
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.9e-119 433.0 294 75.2
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.5e-119 432.6 301 74.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.5e-119 432.6 300 75.7
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.2e-118 430.3 301 73.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-118 430.3 301 73.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.8e-118 429.1 301 73.4
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.6e-118 428.7 295 76.6
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.1e-117 425.6 292 74.0
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 4.0e-117 425.2 300 72.7
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.8e-117 424.5 295 76.6
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 8.9e-117 424.1 298 75.2
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 8.9e-117 424.1 298 75.8
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.5e-116 423.3 297 75.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.4e-116 421.8 302 73.8
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.4e-116 421.8 292 73.3
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.4e-116 421.8 292 73.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 5.8e-116 421.4 287 75.6
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 7.5e-116 421.0 299 75.6
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-115 420.2 292 72.9
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.7e-115 419.9 292 75.7
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.2e-115 419.5 298 74.5
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.9e-115 419.1 290 74.5
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 6.4e-115 417.9 300 72.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.4e-114 416.8 301 72.4
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.2e-114 415.6 300 73.0
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.4e-114 414.8 295 73.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.0e-114 414.5 306 70.3
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.6e-113 413.3 278 75.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.5e-113 412.1 297 73.7
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.3e-112 410.2 300 72.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 5.0e-112 408.3 290 73.8
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 5.0e-112 408.3 300 70.3
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-111 407.1 293 72.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 3.3e-111 405.6 303 71.9
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.7e-110 401.7 291 72.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.4e-109 400.2 291 71.5
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 3.1e-109 399.1 298 70.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 3.1e-109 399.1 298 69.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.2e-109 398.3 298 70.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 6.8e-109 397.9 298 70.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.5e-108 396.7 303 69.6
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.0e-108 396.4 296 69.6
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.0e-108 396.4 291 71.1
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.6e-108 396.0 299 69.6
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.6e-108 396.0 294 69.7
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.6e-108 396.0 291 70.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.4e-108 395.6 296 72.0
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.8e-108 394.8 299 69.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.3e-107 393.7 293 72.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 3.7e-107 392.1 262 75.6
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 4.9e-107 391.7 265 75.1
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.4e-106 390.2 298 68.8
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 3.2e-106 389.0 304 68.4
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 4.1e-106 388.7 261 75.5
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.1e-106 387.9 300 69.0
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 7.1e-106 387.9 292 68.2
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 9.2e-106 387.5 268 73.9
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 9.2e-106 387.5 346 63.6
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.1e-105 386.3 298 69.1
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.1e-105 386.3 317 65.9
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.1e-105 386.3 297 69.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.5e-105 385.6 262 74.8
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 7.8e-105 384.4 300 67.3
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.7e-104 383.3 269 73.2
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 2.3e-104 382.9 292 69.2
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.0e-104 382.5 269 72.9
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 3.9e-104 382.1 317 65.6
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.9e-104 382.1 293 70.6
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.5e-103 379.4 304 68.1
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 4.3e-103 378.6 289 70.2
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 5.6e-103 378.3 293 67.6
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-102 377.1 257 75.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 4.7e-102 375.2 297 66.3
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.8e-101 373.2 297 67.7
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 8.9e-101 370.9 293 67.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-99 366.3 268 70.9
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-98 364.0 267 69.7
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 7.1e-98 361.3 308 64.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 4.6e-97 358.6 247 75.7
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 6.0e-97 358.2 247 75.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.0e-97 358.2 215 81.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 7.8e-97 357.8 255 73.7
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-96 357.5 247 75.7
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 5.1e-96 355.1 245 76.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.5e-95 353.6 280 68.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.5e-95 352.8 255 74.9
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.1e-94 347.8 286 64.3
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.8e-93 346.7 312 61.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 3.1e-93 345.9 230 77.4
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.4e-92 342.4 247 73.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 9.9e-92 340.9 243 72.4
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 9.9e-92 340.9 254 70.1
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.2e-91 339.7 279 67.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.3e-88 329.7 297 62.0
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.0e-85 317.8 296 60.1
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.7e-83 313.5 224 74.1
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.2e-82 308.9 179 86.6
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.1e-82 308.1 212 76.4
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.1e-81 306.6 302 59.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.2e-76 290.8 246 64.6
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 7.6e-76 288.1 301 53.2
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 9.9e-76 287.7 215 71.2
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-75 287.3 179 79.9
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.8e-75 285.8 234 67.1
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.4e-74 283.9 259 59.5
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.9e-74 283.5 316 49.4
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 9.3e-74 281.2 307 52.8
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.3e-72 276.6 307 49.8
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.3e-71 272.3 257 59.5
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.9e-69 265.0 179 71.5
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 9.0e-69 264.6 282 55.3
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 4.2e-66 255.8 177 70.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.7e-65 253.1 219 59.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-63 247.7 255 55.3
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.4e-63 245.0 162 77.2
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 2.9e-59 233.0 138 84.1
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-55 221.1 255 56.1
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.4e-55 218.4 204 59.8
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 6.7e-48 195.3 219 45.2
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 6.7e-48 195.3 173 62.4
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.3e-43 181.0 141 66.7
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.2e-43 180.3 155 63.2
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.8e-37 160.6 118 72.0
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.2e-34 149.4 109 69.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.4e-31 139.4 82 84.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-27 127.9 79 77.2
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.3e-24 117.1 64 85.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 7.2e-18 95.5 66 74.2
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.8e-16 90.9 89 53.9
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-15 88.2 107 52.3
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-14 84.7 88 53.4
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.6e-12 77.8 52 73.1
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-08 65.1 48 68.8


User provided reference genes

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