Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 4.2e-159 564.7 295 100.0
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.1e-154 550.1 295 97.3
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 9.8e-124 447.2 295 78.3
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.8e-123 445.7 295 77.3
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.8e-123 445.7 295 77.3
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.2e-121 440.3 295 75.6
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 7.7e-121 437.6 295 74.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.9e-120 435.6 295 76.3
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.9e-120 435.6 295 76.9
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 2.9e-120 435.6 295 77.6
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 5.5e-119 431.4 295 74.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.1e-118 429.5 295 75.3
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 2.1e-118 429.5 295 75.3
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 4.7e-118 428.3 296 73.6
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 6.1e-118 427.9 295 74.2
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 8.0e-118 427.6 295 73.9
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.4e-117 426.8 295 74.6
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.3e-117 426.0 295 73.9
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 3.0e-117 425.6 295 74.2
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.6e-116 422.5 295 73.2
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 3.4e-116 422.2 295 73.6
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.7e-116 421.4 295 73.9
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.7e-115 419.9 292 73.6
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.7e-115 419.9 295 72.9
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 3.7e-115 418.7 295 73.2
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 8.3e-115 417.5 295 72.2
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 8.3e-115 417.5 295 72.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 71.9
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 73.2
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 72.2
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 2.4e-114 416.0 295 71.9
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.1e-114 415.6 294 74.1
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 4.1e-114 415.2 295 72.2
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 4.1e-114 415.2 317 68.1
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.1e-114 415.2 295 71.9
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 7.0e-114 414.5 293 73.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.2e-113 413.7 295 72.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-113 413.7 295 71.5
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 2.0e-113 412.9 297 71.4
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.7e-113 412.5 297 72.7
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 3.5e-113 412.1 295 72.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 4.5e-113 411.8 295 71.9
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 4.5e-113 411.8 295 71.2
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.5e-113 411.8 321 68.8
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.9e-113 411.4 295 72.2
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.9e-113 411.4 294 73.5
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.0e-112 410.6 294 73.1
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.3e-112 409.5 297 71.7
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.3e-112 409.5 295 72.2
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.9e-112 409.1 307 70.4
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.9e-112 409.1 307 70.4
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.8e-112 408.7 295 72.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 5.0e-112 408.3 294 73.5
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.1e-111 407.1 295 69.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.1e-111 407.1 295 71.2
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.5e-111 406.8 298 69.5
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.6e-111 404.8 295 70.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 9.5e-111 404.1 296 70.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.6e-110 403.3 295 71.5
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.1e-110 402.9 295 72.9
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 2.1e-110 402.9 292 72.3
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 2.1e-110 402.9 296 70.9
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.8e-110 402.5 296 70.9
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 8.0e-110 401.0 297 70.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.8e-109 399.8 307 69.4
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.8e-109 399.8 295 70.5
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 3.1e-109 399.1 295 69.8
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 5.2e-109 398.3 296 70.3
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 8.9e-109 397.5 298 71.1
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.2e-108 397.1 295 70.2
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 2.0e-108 396.4 325 64.6
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.6e-108 396.0 294 71.1
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.7e-107 393.3 292 71.2
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.9e-107 392.5 295 70.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.7e-107 392.1 321 65.1
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 6.4e-107 391.3 271 73.8
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 2.4e-106 389.4 328 64.3
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.0e-105 386.3 296 69.3
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 4.6e-105 385.2 306 67.6
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 6.0e-105 384.8 352 60.5
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.7e-104 383.3 330 64.5
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 3.9e-104 382.1 286 72.0
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.9e-103 379.8 297 66.3
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.3e-103 378.6 293 68.3
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 9.5e-103 377.5 295 70.2
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.2e-102 377.1 296 68.6
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 3.6e-102 375.6 296 67.2
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.8e-101 373.2 295 66.8
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.0e-101 372.1 295 66.8
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 3.4e-100 369.0 296 64.9
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 7.5e-100 367.9 295 66.1
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 2.4e-98 362.8 298 65.8
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.2e-98 362.5 294 65.6
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 4.1e-98 362.1 238 75.6
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 4.1e-98 362.1 297 65.0
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 7.0e-98 361.3 296 63.9
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.2e-97 360.5 295 66.4
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.1e-97 359.8 297 66.0
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.5e-97 359.0 297 65.3
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.0e-96 357.5 297 65.0
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.3e-96 356.3 311 62.1
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.5e-95 352.8 295 66.1
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 2.5e-95 352.8 301 63.1
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 7.3e-95 351.3 299 63.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 4.7e-94 348.6 286 65.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.1e-93 347.4 298 64.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.3e-93 346.3 297 64.0
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 2.3e-93 346.3 238 74.4
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 6.8e-93 344.7 277 65.7
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-92 343.2 291 64.3
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 5.8e-92 341.7 290 64.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 3.2e-90 335.9 340 56.8
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 4.1e-90 335.5 239 72.8
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.5e-89 332.4 238 71.0
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.3e-87 325.9 298 62.8
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.6e-81 307.0 315 55.9
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.3e-80 303.9 310 53.9
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 7.3e-79 298.1 209 72.7
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.8e-78 296.2 205 74.1
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.0e-77 292.4 298 55.0
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.3e-77 292.0 295 57.3
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 5.8e-76 288.5 217 73.3
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 7.6e-76 288.1 295 55.6
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.7e-75 287.0 257 61.1
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 6.0e-73 278.5 300 52.0
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.0e-72 277.7 207 70.0
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.6e-72 275.0 295 53.9
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.6e-72 275.0 278 54.0
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 8.7e-72 274.6 207 71.5
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.5e-71 273.9 280 58.6
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.8e-70 269.6 285 54.0
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 4.8e-70 268.9 288 53.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.8e-69 266.9 295 53.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 1.8e-69 266.9 207 67.6
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.4e-66 256.5 210 65.7
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.2e-65 254.2 370 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 2.1e-62 243.4 224 55.4
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.8e-62 243.0 291 50.9
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 4.0e-61 239.2 330 47.0
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 7.9e-57 224.9 197 60.9
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.9e-55 220.3 317 38.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 2.6e-52 209.9 177 66.1
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 2.9e-51 206.5 333 41.4
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.4e-45 186.8 124 72.6
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.9e-40 169.5 348 35.9
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 3.6e-33 146.4 90 78.9
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 7.4e-31 138.7 90 75.6
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.5e-26 124.4 311 30.2
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.6e-25 119.8 82 70.7
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.7e-19 100.9 130 49.2
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 3.8e-19 99.8 101 54.5
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 8.5e-19 98.6 150 44.7
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 4.2e-18 96.3 82 61.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.7e-17 93.6 170 41.8
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 2.6e-15 87.0 60 68.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.0e-11 75.1 336 25.9
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 2.2e-11 73.9 57 68.4
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 7.5e-07 58.9 106 38.7


User provided reference genes

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